Hs03032775_cn

• Gene Symbol: PCDHGA1
• Assay Reference Genome Location: Chr.5:141344360 on build GRCh38
• Cytoband: 5q31.3

Target Gene Details

• Entrez Gene ID: 56114
• Gene Name: protocadherin gamma subfamily A, 1
• Gene Aliases: PCDH-GAMMA-A1
• Location: Chr.5:141330685-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA1	NM_018912.2			NP_061735.1
	AF152318.1			AAD43712.1

Target Gene Details

• Entrez Gene ID: 56113
• Gene Name: protocadherin gamma subfamily A, 2
• Gene Aliases: PCDH-GAMMA-A2
• Location: Chr.5:141338760-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA2	NM_018915.3			NP_061738.1
	AF152322.1			AAD43716.1

Target Gene Details

• Entrez Gene ID: 56112
• Gene Name: protocadherin gamma subfamily A, 3
• Gene Aliases: PCDH-GAMMA-A3
• Location: Chr.5:141344034-141512979 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA3	NM_018916.3	1	327	NP_061739.2
	NM_032011.1	1	327	NP_114400.1
	AB208927.1	1	493	BAD92164.1
	AF152323.1	1	327	AAD43717.1
	AF152510.1	1	327	AAD43770.1
	BC115408.1	1	327
	BC115409.1	1	327
	BC133708.1	1	325

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv3606980	Chr.5:141341467 - 141345266 on Build GRCh38	Loss	PCDHGA2 PCDHGA3 PCDHGA1
esv2759382	Chr.5:140777355 - 141449115 on Build GRCh38	Gain	PCDHA3 PCDHA10 PCDHGA3 PCDHGA10 PCDHB9 PCDHGB7 PCDHB13 LOC101926905 PCDHGA11 PCDHB15 PCDHGA1 PCDHA7 PCDHGA4 PCDHA8 PCDHB16 PCDHB5 PCDHGB1 PCDHB3 PCDHGA9 PCDHGB6 PCDHB17P PCDHB12 PCDHB7 PCDHB8 PCDHB10 PCDHB2 PCDHA2 PCDHB4 PCDHGA6 PCDHB19P PCDHA11 PCDHA13 PCDHA9 PCDHB1 PCDHGA12 PCDHA5 PCDHA6 PCDHGA7 PCDHAC1 PCDHA1 PCDHB11 PCDHAC2 PCDHGB8P PCDHA12 PCDHGA5 PCDHGB4 PCDHB14 TAF7 PCDHB6 PCDHGA2 PCDHGB3 PCDHGA8 PCDHGB2 PCDHGB5 PCDHA4 PCDHB18P SLC25A2
esv3570470	Chr.5:141337905 - 141348151 on Build GRCh38	Loss	PCDHGA2 PCDHGA3 PCDHGA1
nsv599922	Chr.5:141341879 - 141416532 on Build GRCh38	Loss	PCDHGA6 PCDHGA5 PCDHGB4 PCDHGA3 PCDHGA10 PCDHGB1 PCDHGA9 PCDHGB6 PCDHGA2 PCDHGB3 PCDHGA8 PCDHGB2 PCDHGB5 PCDHGA7 PCDHGA1 PCDHGA4

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

homophilic cell adhesion via plasma membrane adhesion molecules
endosome to lysosome transport
lipid tube assembly involved in organelle fusion

Function(s)

calcium ion binding