Assay Details
Target Gene Details
Entrez Gene ID: | 58191 |
Gene Name: | C-X-C motif chemokine ligand 16 |
Gene Aliases: |
CXCLG16, SR-PSOX, SRPSOX |
Location: |
Chr.17:4733529-4739928 on Build GRCh38 |
Assay Gene Location: | Within Exon 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
CXCL16 | NM_001100812.1 | 1 | 475 | NP_001094282.1 |
NM_022059.3 | 1 | 475 | NP_071342.2 | |
AF275260.1 | AAG31750.1 | |||
AF301016.1 | 1 | 366 | AAG34365.1 | |
AK027389.1 | 1 | 393 | BAB55078.1 | |
AK292114.1 | 1 | 317 | ||
AK315017.1 | 1 | 475 | ||
AY358909.1 | 1 | 320 | AAQ89268.1 | |
BC017588.1 | 1 | 469 | AAH17588.1 | |
BC044930.1 | 1 | 170 | AAH44930.1 | |
DC373874.1 | 1 | 475 | ||
JC209418.1 | 1 | 475 | ||
JC209420.1 | 1 | 475 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv574273 | Chr.17:4585589 - 5460332 on Build GRCh38 | Gain | PELP1 SMTNL2 ZNF232 NUP88 VMO1 TM4SF5 C1QBP LOC101927979 ARRB2 LOC101559451 ENO3 MINK1 GLTPD2 SPAG7 MIR6864 PFN1 LOC100130950 ALOX15 LOC101928000 MIR6865 RABEP1 PLD2 MED11 SCIMP INCA1 USP6 CHRNE LOC102724009 LOC107984973 DHX33 PSMB6 C17orf107 CXCL16 ZNF594 RNF167 GP1BA CAMTA2 SLC52A1 SLC25A11 KIF1C RPAIN ZMYND15 ZFP3 LOC400568 |
nsv833346 | Chr.17:4646256 - 4860871 on Build GRCh38 | Loss | PELP1 PLD2 MED11 VMO1 TM4SF5 LOC107984973 PSMB6 ARRB2 LOC101559451 CXCL16 MINK1 GLTPD2 ZMYND15 |
nsv1952 | Chr.17:4726245 - 4748889 on Build GRCh38 | Insertion | CXCL16 MED11 ZMYND15 |
More Information
Set Membership: |
Intragenic Exonic DGV Variation |