Hs03003067_cn

• Gene Symbol: PCDHGA1
• Assay Reference Genome Location: Chr.5:141423422 on build GRCh38
• Cytoband: 5q31.3

Target Gene Details

• Entrez Gene ID: 56114
• Gene Name: protocadherin gamma subfamily A, 1
• Gene Aliases: PCDH-GAMMA-A1
• Location: Chr.5:141330685-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA1	NM_018912.2			NP_061735.1
	AF152318.1			AAD43712.1

Target Gene Details

• Entrez Gene ID: 56106
• Gene Name: protocadherin gamma subfamily A, 10
• Gene Aliases: PCDH-GAMMA-A10
• Location: Chr.5:141413176-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA10	NM_018913.2			NP_061736.1
	AF152319.1			AAD43713.1

Target Gene Details

• Entrez Gene ID: 56105
• Gene Name: protocadherin gamma subfamily A, 11
• Gene Aliases: PCDH-GAMMA-A11
• Location: Chr.5:141420970-141512979 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA11	NM_018914.2	1	2453	NP_061737.1
	NM_032091.1	1	2453	NP_114480.1
	NM_032092.1			NP_114481.1
	AF152320.1	1	2195	AAD43714.1
	AF152504.1			AAD43765.1
	AF152505.1	1	2195	AAD43766.1
	BC136781.1	1	2228
	BC171774.1	1	2228

Target Gene Details

• Entrez Gene ID: 56113
• Gene Name: protocadherin gamma subfamily A, 2
• Gene Aliases: PCDH-GAMMA-A2
• Location: Chr.5:141338760-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA2	NM_018915.3			NP_061738.1
	AF152322.1			AAD43716.1

Target Gene Details

• Entrez Gene ID: 56112
• Gene Name: protocadherin gamma subfamily A, 3
• Gene Aliases: PCDH-GAMMA-A3
• Location: Chr.5:141344034-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA3	NM_018916.3			NP_061739.2
	AB208927.1			BAD92164.1
	AF152323.1			AAD43717.1

Target Gene Details

• Entrez Gene ID: 56111
• Gene Name: protocadherin gamma subfamily A, 4
• Gene Aliases: PCDH-GAMMA-A4
• Location: Chr.5:141355025-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA4	NM_018917.3			NP_061740.2
	AF152324.1			AAD43718.1

Target Gene Details

• Entrez Gene ID: 56110
• Gene Name: protocadherin gamma subfamily A, 5
• Gene Aliases: CDH-GAMMA-A5, ME3, PCDH-GAMMA-A5
• Location: Chr.5:141364331-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA5	NM_018918.2			NP_061741.1
	AF152325.1			AAD43719.1

Target Gene Details

• Entrez Gene ID: 56109
• Gene Name: protocadherin gamma subfamily A, 6
• Gene Aliases: PCDH-GAMMA-A6
• Location: Chr.5:141374084-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA6	NM_018919.2			NP_061742.1
	AB209178.1			BAD92415.1
	AF152326.1			AAD43720.1
	BC146651.1

Target Gene Details

• Entrez Gene ID: 56108
• Gene Name: protocadherin gamma subfamily A, 7
• Gene Aliases: PCDH-GAMMA-A7
• Location: Chr.5:141382739-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA7	NM_018920.3			NP_061743.1
	AB208958.1			BAD92195.1
	AF152327.1			AAD43721.1

Target Gene Details

• Entrez Gene ID: 9708
• Gene Name: protocadherin gamma subfamily A, 8
• Gene Aliases: PCDH-GAMMA-A8
• Location: Chr.5:141391916-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA8	NM_032088.1			NP_114477.1
	AF152328.1			AAD43722.1

Target Gene Details

• Entrez Gene ID: 56107
• Gene Name: protocadherin gamma subfamily A, 9
• Gene Aliases: PCDH-GAMMA-A9
• Location: Chr.5:141402953-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA9	NM_018921.2			NP_061744.1
	AF152329.1			AAD43723.1

Target Gene Details

• Entrez Gene ID: 56104
• Gene Name: protocadherin gamma subfamily B, 1
• Gene Aliases: PCDH-GAMMA-B1
• Location: Chr.5:141350261-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGB1	NM_018922.2			NP_061745.1
	AF152330.1			AAD43724.1

Target Gene Details

• Entrez Gene ID: 56103
• Gene Name: protocadherin gamma subfamily B, 2
• Gene Aliases: PCDH-GAMMA-B2
• Location: Chr.5:141360136-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGB2	NM_018923.2			NP_061746.1
	AF152331.1			AAD43725.1

Target Gene Details

• Entrez Gene ID: 56102
• Gene Name: protocadherin gamma subfamily B, 3
• Gene Aliases: PCDH-GAMMA-B3
• Location: Chr.5:141370264-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGB3	NM_018924.4			NP_061747.2
	AF152332.1			AAD43726.1
	BC150172.1

Target Gene Details

• Entrez Gene ID: 8641
• Gene Name: protocadherin gamma subfamily B, 4
• Gene Aliases: CDH20, FIB2, PCDH-GAMMA-B4
• Location: Chr.5:141387885-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGB4	NM_003736.2			NP_003727.1
	AF152333.1			AAD43727.1

Target Gene Details

• Entrez Gene ID: 56101
• Gene Name: protocadherin gamma subfamily B, 5
• Gene Aliases: PCDH-GAMMA-B5
• Location: Chr.5:141398128-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGB5	NM_018925.2			NP_061748.1
	AF152334.1			AAD43728.1

Target Gene Details

• Entrez Gene ID: 56100
• Gene Name: protocadherin gamma subfamily B, 6
• Gene Aliases: PCDH-GAMMA-B6
• Location: Chr.5:141408203-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGB6	NM_018926.2			NP_061749.1
	AF152335.1			AAD43729.1

Target Gene Details

• Entrez Gene ID: 56099
• Gene Name: protocadherin gamma subfamily B, 7
• Gene Aliases: ME6, PCDH-GAMMA-B7
• Location: Chr.5:141417647-141512981 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGB7	NM_018927.3			NP_061750.1
	AF152336.1			AAD43730.1
	BC051788.2			AAH51788.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv2759382	Chr.5:140777355 - 141449115 on Build GRCh38	Gain	PCDHA11 PCDHGB4 PCDHB10 PCDHA8 PCDHGA4 PCDHGA11 PCDHGA5 PCDHA7 PCDHA3 PCDHB8 PCDHGA2 TAF7 PCDHA2 PCDHB2 PCDHB11 PCDHB5 PCDHA12 PCDHGA9 PCDHA1 PCDHGB8P PCDHB6 PCDHB18P PCDHB7 PCDHB14 PCDHB1 PCDHA13 PCDHA6 PCDHB19P PCDHB9 PCDHGA1 PCDHA10 PCDHB12 PCDHGA12 PCDHGB1 PCDHGA8 PCDHA9 PCDHB16 PCDHB17P PCDHGA7 PCDHB4 PCDHGB2 PCDHA4 PCDHGB7 PCDHGA10 SLC25A2 PCDHGB5 PCDHB3 LOC101926905 PCDHGA3 PCDHAC2 PCDHAC1 PCDHGB3 PCDHB13 PCDHGA6 PCDHA5 PCDHB15 PCDHGB6
esv3606987	Chr.5:141415048 - 141430227 on Build GRCh38	Gain	PCDHGA2 PCDHGB1 PCDHGA8 PCDHGB4 PCDHGA3 PCDHGA7 PCDHGA9 PCDHGB8P PCDHGB2 PCDHGB3 PCDHGB7 PCDHGA6 PCDHGA10 PCDHGA4 PCDHGB5 PCDHGB6 PCDHGA11 PCDHGA1 PCDHGA5
nsv519627	Chr.5:141392860 - 141427689 on Build GRCh38	Loss	PCDHGA2 PCDHGB1 PCDHGA8 PCDHGB4 PCDHGA3 PCDHGA7 PCDHGA9 PCDHGB8P PCDHGB2 PCDHGB3 PCDHGB7 PCDHGA6 PCDHGA10 PCDHGA4 PCDHGB5 PCDHGB6 PCDHGA11 PCDHGA1 PCDHGA5
nsv980740	Chr.5:141423094 - 141423853 on Build GRCh38	Duplication	PCDHGA2 PCDHGB1 PCDHGA8 PCDHGB4 PCDHGA3 PCDHGA7 PCDHGA9 PCDHGB2 PCDHGB3 PCDHGB7 PCDHGA6 PCDHGA10 PCDHGA4 PCDHGB5 PCDHGB6 PCDHGA11 PCDHGA1 PCDHGA5
esv2730847	Chr.5:141415403 - 141432967 on Build GRCh38	Deletion	PCDHGA12 PCDHGA2 PCDHGB1 PCDHGA8 PCDHGB4 PCDHGA3 PCDHGA7 PCDHGA9 PCDHGB8P PCDHGB2 PCDHGB3 PCDHGB7 PCDHGA6 PCDHGA10 PCDHGA4 PCDHGB5 PCDHGB6 PCDHGA11 PCDHGA1 PCDHGA5

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

homophilic cell adhesion via plasma membrane adhesion molecules
endosome to lysosome transport
lipid tube assembly involved in organelle fusion
cell adhesion
calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules
biological_process

Function(s)

calcium ion binding
poly(A) RNA binding
molecular_function