Assay Details
Target Gene Details
Entrez Gene ID: | 23042 |
Gene Name: | pyridoxal dependent decarboxylase domain containing 1 |
Gene Aliases: |
LP8165 |
Location: |
Chr.16:14974591-15139410 on Build GRCh38 |
Assay Gene Location: | Within Intron 26 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
PDXDC1 | NM_001285449.1 | NP_001272378.1 | ||
NM_001324020.1 | NP_001310949.1 | |||
NM_001324021.1 | NP_001310950.1 | |||
XM_017023065.1 | XP_016878554.1 | |||
AY203955.1 | AAP34478.1 | |||
BC045554.1 | AAH45554.2 | |||
CD370048.1 |
Target Gene Details
Entrez Gene ID: | 54700 |
Gene Name: | RRN3 homolog, RNA polymerase I transcription factor |
Gene Aliases: |
A-270G1.2, TIFIA |
Location: |
Chr.16:15060022-15094335 on Build GRCh38 |
Assay Gene Location: | Within Exon 19 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
RRN3 | NM_001301064.1 | 17 | 3213 | NP_001287993.1 |
NM_018427.4 | 18 | 3303 | NP_060897.3 | |
XM_005255376.1 | 16 | 3078 | XP_005255433.1 | |
XM_005255377.4 | 15 | 3027 | XP_005255434.1 | |
XM_011522540.2 | 13 | 2715 | XP_011520842.1 | |
XM_011522541.1 | 17 | 3142 | XP_011520843.1 | |
AJ272050.1 | 18 | 3223 | CAC07955.1 | |
AK225662.1 | ||||
AL110238.1 | 1 | 457 | ||
BC071868.1 | 10 | 2538 | AAH71868.1 | |
BU676519.1 | 1 | 494 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
dgv4922n54 | Chr.16:15025750 - 15099845 on Build GRCh38 | Loss | NTAN1 RRN3 PDXDC1 LOC100505915 |
esv3570354 | Chr.16:15034129 - 15223463 on Build GRCh38 | Gain | NTAN1 RRN3 MIR6511B2 MIR3180-4 PDXDC1 PKD1P6-NPIPP1 LOC100505915 |
nsv1042130 | Chr.16:14954899 - 15100193 on Build GRCh38 | Gain | NTAN1 LOC728138 RRN3 PDXDC1 MIR1972-1 LOC100505915 |
nsv509598 | Chr.16:15025400 - 15067337 on Build GRCh38 | Insertion | NTAN1 RRN3 PDXDC1 |
nsv1038955 | Chr.16:14885100 - 15322641 on Build GRCh38 | Loss | MIR3179-1 LOC728138 MIR6511A1 MIR6511B2 MIR3180-4 LOC100288162 PDXDC1 MIR1972-1 LOC100505915 MIR3670-1 NTAN1 NOMO1 RRN3 MIR6770-1 MIR3180-1 NPIPA1 PKD1P6-NPIPP1 |
esv2758632 | Chr.16:14528198 - 15272693 on Build GRCh38 | Gain+Loss | LOC105371095 MIR3179-1 LOC728138 NPIPA2 MIR6511A1 MIR3180-4 PDXDC1 LOC100652777 MIR3670-1 NOMO1 PLA2G10 BFAR LOC105376747 RRN3 MIR6770-1 PARN NPIPA3 MIR6511B2 LOC100288162 MIR1972-1 LOC100505915 NTAN1 ABCC6P2 MIR3180-1 NPIPA1 PKD1P6-NPIPP1 |
esv2762254 | Chr.16:14741210 - 15322653 on Build GRCh38 | Gain+Loss | MIR3179-1 LOC728138 NPIPA2 MIR6511A1 MIR6511B2 MIR3180-4 LOC100288162 PDXDC1 MIR1972-1 LOC100505915 MIR3670-1 NTAN1 ABCC6P2 NOMO1 LOC105376747 RRN3 MIR6770-1 MIR3180-1 NPIPA1 PKD1P6-NPIPP1 |
dgv2755n100 | Chr.16:14877546 - 15434384 on Build GRCh38 | Gain | NPIPA5 MIR3179-1 LOC728138 MIR6511A1 MIR6511B2 MIR3180-4 LOC100288162 PDXDC1 MIR1972-1 LOC100505915 MPV17L MIR3670-1 NTAN1 NOMO1 RRN3 MIR6770-1 MIR3180-1 NPIPA1 PKD1P6-NPIPP1 |
esv3892796 | Chr.16:14961008 - 15074903 on Build GRCh38 | Loss | NTAN1 LOC728138 RRN3 PDXDC1 MIR1972-1 |
nsv1053467 | Chr.16:15031584 - 15322641 on Build GRCh38 | Loss | NTAN1 RRN3 MIR6511B2 MIR3180-4 PDXDC1 PKD1P6-NPIPP1 LOC100505915 |
esv3638020 | Chr.16:15031082 - 15082591 on Build GRCh38 | Loss | NTAN1 RRN3 PDXDC1 |
More Information
Set Membership: |
Intragenic Exonic Intronic Non-exonic DGV Variation |