Assay Details
Target Gene Details
Entrez Gene ID: | 1649 |
Gene Name: | DNA damage inducible transcript 3 |
Gene Aliases: |
CEBPZ, CHOP, CHOP-10, CHOP10, GADD153 |
Location: |
Chr.12:57516588-57520517 on Build GRCh38 |
Assay Gene Location: | Within Exon 3 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
DDIT3 | NM_001195053.1 | 4 | 940 | NP_001181982.1 |
NM_001195054.1 | 4 | 887 | NP_001181983.1 | |
NM_001195055.1 | 4 | 864 | NP_001181984.1 | |
NM_001195056.1 | 3 | 1050 | NP_001181985.1 | |
NM_001195057.1 | 4 | 769 | NP_001181986.1 | |
NM_004083.5 | 4 | 783 | NP_004074.2 | |
AI658803.1 | 1 | 145 | ||
AV729744.1 | ||||
AY461580.1 | 4 | 942 | ||
BC003637.2 | 4 | 784 | AAH03637.1 | |
BM464290.1 | 4 | 773 | ||
S40706.1 | 4 | 774 | AAB22646.1 |
Target Gene Details
Entrez Gene ID: | 4141 |
Gene Name: | methionyl-tRNA synthetase |
Gene Aliases: |
CMT2U, ILFS2, ILLD, METRS, MRS, MTRNS, SPG70 |
Location: |
Chr.12:57487953-57516655 on Build GRCh38 |
Assay Gene Location: | Overlaps - Exon 21 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
MARS | NM_004990.3 | NP_004981.2 | ||
XM_006719398.3 | XP_006719461.1 | |||
AK122956.1 | ||||
BC002384.2 | AAH02384.1 | |||
BC006328.2 | AAH06328.1 | |||
BC011639.2 | AAH11639.1 | |||
BC011849.2 | AAH11849.1 | |||
BC015011.1 | AAH15011.1 | |||
D84224.1 | BAA95668.1 | |||
Z49216.1 | CAA89153.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv428283 | Chr.12:57435950 - 57608085 on Build GRCh38 | Gain | MBD6 KIF5A GLI1 INHBE DDIT3 MARS PIP4K2C DCTN2 MIR6758 ARHGAP9 DTX3 INHBC MIR616 |
nsv559034 | Chr.12:57466149 - 57618450 on Build GRCh38 | Loss | ARHGEF25 MBD6 KIF5A GLI1 DDIT3 MARS PIP4K2C DCTN2 MIR6758 ARHGAP9 DTX3 MIR616 LOC101927583 |
nsv469411 | Chr.12:57450266 - 57527405 on Build GRCh38 | Loss | MBD6 GLI1 INHBE MIR6758 ARHGAP9 DDIT3 INHBC MARS MIR616 |
nsv482992 | Chr.12:56206217 - 57706217 on Build GRCh38 | Gain+Loss | SNORA105C COQ10A KIF5A INHBE TIMELESS NEMP1 DCTN2 STAT6 SNORD59A ZBTB39 ATP5B RDH16 BAZ2A HBCBP INHBC MIR616 LOC101927583 B4GALNT1 DDIT3 R3HDM2 APOF PIP4K2C SLC26A10 NACA ANKRD52 MYO1A SLC39A5 RNF41 HSD17B6 TAC3 MIR6758 SDR9C7 LRP1-AS NXPH4 SNORD59B GLS2 PTGES3 ARHGEF25 MBD6 GLI1 PAN2 SHMT2 MARS MIR1228 SPRYD4 NABP2 NDUFA4L2 DTX3 IL23A OS9 CS LRP1 CNPY2 STAC3 PRIM1 STAT2 RBMS2 ARHGAP9 NAB2 MIP GPR182 |
More Information
Set Membership: |
Intragenic Exonic Non-exonic DGV Variation |