Hs02890920_cn

• Gene Symbol: PCDHGA1
• Assay Reference Genome Location: Chr.5:141360806 on build GRCh38
• Cytoband: 5q31.3

Target Gene Details

• Entrez Gene ID: 56114
• Gene Name: protocadherin gamma subfamily A, 1
• Gene Aliases: PCDH-GAMMA-A1
• Location: Chr.5:141330685-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA1	NM_018912.2			NP_061735.1
	AF152318.1			AAD43712.1

Target Gene Details

• Entrez Gene ID: 56113
• Gene Name: protocadherin gamma subfamily A, 2
• Gene Aliases: PCDH-GAMMA-A2
• Location: Chr.5:141338760-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA2	NM_018915.3			NP_061738.1
	AF152322.1			AAD43716.1

Target Gene Details

• Entrez Gene ID: 56112
• Gene Name: protocadherin gamma subfamily A, 3
• Gene Aliases: PCDH-GAMMA-A3
• Location: Chr.5:141344034-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA3	NM_018916.3			NP_061739.2
	AB208927.1			BAD92164.1
	AF152323.1			AAD43717.1

Target Gene Details

• Entrez Gene ID: 56111
• Gene Name: protocadherin gamma subfamily A, 4
• Gene Aliases: PCDH-GAMMA-A4
• Location: Chr.5:141355025-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA4	NM_018917.3			NP_061740.2
	AF152324.1			AAD43718.1

Target Gene Details

• Entrez Gene ID: 56104
• Gene Name: protocadherin gamma subfamily B, 1
• Gene Aliases: PCDH-GAMMA-B1
• Location: Chr.5:141350261-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGB1	NM_018922.2			NP_061745.1
	AF152330.1			AAD43724.1

Target Gene Details

• Entrez Gene ID: 56103
• Gene Name: protocadherin gamma subfamily B, 2
• Gene Aliases: PCDH-GAMMA-B2
• Location: Chr.5:141360136-141512979 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGB2	NM_018923.2	1	671	NP_061746.1
	NM_032096.1	1	671	NP_115267.1
	AF152331.1	1	671	AAD43725.1
	AF152518.1	1	671	AAD43778.1
	BC101805.1	1	734	AAI01806.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv2759382	Chr.5:140777355 - 141449115 on Build GRCh38	Gain	PCDHGB5 PCDHGA10 PCDHB11 PCDHB17P PCDHA1 PCDHA6 PCDHGB8P PCDHB10 PCDHB12 PCDHA9 PCDHA12 PCDHGB3 PCDHA8 PCDHB7 PCDHGB2 TAF7 PCDHGA11 PCDHB1 PCDHB2 PCDHB6 PCDHB8 PCDHB9 PCDHGA2 PCDHB16 PCDHA4 PCDHGA7 PCDHAC1 PCDHGA9 PCDHA10 PCDHB5 PCDHB19P SLC25A2 PCDHB13 PCDHA3 PCDHGA12 PCDHGB7 PCDHGB4 PCDHB3 PCDHGA5 PCDHB14 PCDHGB6 PCDHAC2 PCDHA13 LOC101926905 PCDHA7 PCDHB4 PCDHGA6 PCDHGB1 PCDHGA3 PCDHB15 PCDHA11 PCDHA5 PCDHGA1 PCDHGA4 PCDHGA8 PCDHA2 PCDHB18P
esv3606982	Chr.5:141352280 - 141361411 on Build GRCh38	Loss	PCDHGA2 PCDHGB2 PCDHGA1 PCDHGA4 PCDHGB1 PCDHGA3
nsv599922	Chr.5:141341879 - 141416532 on Build GRCh38	Loss	PCDHGB5 PCDHGA10 PCDHGB2 PCDHGA9 PCDHGA6 PCDHGB1 PCDHGA3 PCDHGA2 PCDHGA7 PCDHGB4 PCDHGA1 PCDHGA4 PCDHGA5 PCDHGA8 PCDHGB6 PCDHGB3

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

homophilic cell adhesion via plasma membrane adhesion molecules
endosome to lysosome transport
lipid tube assembly involved in organelle fusion

Function(s)

calcium ion binding