Assay Details
Target Gene Details
Entrez Gene ID: | 4849 |
Gene Name: | CCR4-NOT transcription complex subunit 3 |
Gene Aliases: |
LENG2, NOT3, NOT3H |
Location: |
Chr.19:54137689-54155708 on Build GRCh38 |
Assay Gene Location: | Within Exon 14 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
CNOT3 | NM_014516.3 | 14 | 1975 | NP_055331.1 |
XM_005278279.1 | 14 | 1978 | XP_005278336.1 | |
XM_005278280.2 | 14 | 2012 | XP_005278337.1 | |
XM_005278281.1 | 14 | 1975 | XP_005278338.1 | |
XM_005278282.2 | 14 | 1978 | XP_005278339.1 | |
XM_011526992.1 | 14 | 1978 | XP_011525294.1 | |
XM_011526993.2 | 14 | 1978 | XP_011525295.1 | |
AB014591.1 | 13 | 3249 | ||
AF180474.1 | 13 | 1701 | AAF29828.1 | |
AK160386.1 | 13 | 2164 | BAD18729.1 | |
AK300434.1 | 14 | 1913 | ||
AL133647.1 | 9 | 1462 | CAB63766.1 | |
BC016474.1 | 14 | 1928 | AAH16474.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
esv3644782 | Chr.19:54138064 - 54154026 on Build GRCh38 | Gain | CNOT3 |
esv3644783 | Chr.19:54151022 - 54159664 on Build GRCh38 | Gain | LENG1 CNOT3 |
nsv515623 | Chr.19:54102901 - 54179150 on Build GRCh38 | Loss | LENG1 TFPT PRPF31 MBOAT7 NDUFA3 CNOT3 TMC4 |
nsv953613 | Chr.19:54097214 - 54198733 on Build GRCh38 | Deletion | OSCAR LENG1 TSEN34 TFPT PRPF31 MBOAT7 NDUFA3 CNOT3 TMC4 |
esv2718812 | Chr.19:53184636 - 54322450 on Build GRCh38 | Deletion | ZNF813 MIR520E MIR498 OSCAR CACNG7 CACNG8 LOC284379 PRKCG MIR521-1 MIR517A NDUFA3 LILRA6 MIR517B CNOT3 DPRX VN1R2 MIR371B TSEN34 TFPT MIR512-2 MIR1283-2 MIR520A RPS9 MIR372 MIR519A2 ZNF665 ZNF761 MIR520H MIR515-1 MIR517C LENG1 MIR4752 PRPF31 LILRB2 MIR1323 ZNF331 MIR516B1 MIR520C MIR524 MIR512-1 TMC4 MIR519D MIR516B2 VN1R4 LOC105372457 TPM3P9 MIR516A2 MIR373 MIR518A2 MIR516A1 ZNF677 MIR519E NLRP12 MIR518D MIR525 FAM90A27P MIR935 MBOAT7 MIR526A1 MIR519B MIR526A2 MIR522 MIR520D MIR518E MIR371A MIR518C MIR518B MIR520B MIR523 MIR526B MIR518F LILRA5 MIR515-2 MIR519A1 MIR519C ZNF765 MIR1283-1 TARM1 VSTM1 ZNF525 LILRB3 ZNF818P MIR521-2 MYADM MIR527 MIR520G LILRB5 ZNF845 MIR518A1 BIRC8 MIR520F CACNG6 |
More Information
Set Membership: |
Intragenic Exonic DGV Variation |