Assay Details
Target Gene Details
Entrez Gene ID: | 26018 |
Gene Name: | leucine rich repeats and immunoglobulin like domains 1 |
Gene Aliases: |
LIG-1, LIG1 |
Location: |
Chr.3:66378797-66501124 on Build GRCh38 |
Assay Gene Location: | Within Exon 22 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
LRIG1 | NM_015541.2 | 19 | 3741 | NP_056356.2 |
XM_011533578.1 | 18 | 4198 | XP_011531880.1 | |
XM_011533579.2 | 19 | 3541 | XP_011531881.1 | |
XM_017006134.1 | 18 | 4267 | XP_016861623.1 | |
XM_017006135.1 | 14 | 3064 | XP_016861624.1 | |
XM_017006136.1 | 19 | 3605 | XP_016861625.1 | |
AB050468.1 | 19 | 4249 | BAB40659.1 | |
AF381545.1 | 19 | 3741 | AAK62357.1 | |
AK126745.1 | 12 | 3109 | ||
AL117666.1 | 6 | 1898 | CAB56036.1 | |
AY730707.1 | 18 | 3758 | AAU44786.1 | |
BC014276.2 | 6 | 1700 | AAH14276.2 | |
BC071561.1 | 20 | 4262 | AAH71561.1 | |
BC140907.1 | 19 | 3747 |
Target Gene Details
Entrez Gene ID: | 115286 |
Gene Name: | solute carrier family 25 member 26 |
Gene Aliases: |
COXPD28, SAMC |
Location: |
Chr.3:66133610-66380021 on Build GRCh38 |
Assay Gene Location: |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SLC25A26 | CR749718.1 | CAI46206.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv590546 | Chr.3:65487766 - 67232113 on Build GRCh38 | Gain | MAGI1 SLC25A26 LOC105377143 MIR4272 LRIG1 MAGI1-AS1 KBTBD8 |
nsv516847 | Chr.3:66377858 - 66387532 on Build GRCh38 | Loss | SLC25A26 LRIG1 |
More Information
Additional Information:
For this assay, SNP(s) [rs79203552] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Exonic Non-exonic DGV Variation |