Hs02744573_cn

• Gene Symbol: PCDHGA1
• Assay Reference Genome Location: Chr.5:141398646 on build GRCh38
• Cytoband: 5q31.3

Target Gene Details

• Entrez Gene ID: 56114
• Gene Name: protocadherin gamma subfamily A, 1
• Gene Aliases: PCDH-GAMMA-A1
• Location: Chr.5:141330685-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA1	NM_018912.2			NP_061735.1
	AF152318.1			AAD43712.1

Target Gene Details

• Entrez Gene ID: 56113
• Gene Name: protocadherin gamma subfamily A, 2
• Gene Aliases: PCDH-GAMMA-A2
• Location: Chr.5:141338760-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA2	NM_018915.3			NP_061738.1
	AF152322.1			AAD43716.1

Target Gene Details

• Entrez Gene ID: 56112
• Gene Name: protocadherin gamma subfamily A, 3
• Gene Aliases: PCDH-GAMMA-A3
• Location: Chr.5:141344034-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA3	NM_018916.3			NP_061739.2
	AB208927.1			BAD92164.1
	AF152323.1			AAD43717.1

Target Gene Details

• Entrez Gene ID: 56111
• Gene Name: protocadherin gamma subfamily A, 4
• Gene Aliases: PCDH-GAMMA-A4
• Location: Chr.5:141355025-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA4	NM_018917.3			NP_061740.2
	AF152324.1			AAD43718.1

Target Gene Details

• Entrez Gene ID: 56110
• Gene Name: protocadherin gamma subfamily A, 5
• Gene Aliases: CDH-GAMMA-A5, ME3, PCDH-GAMMA-A5
• Location: Chr.5:141364331-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA5	NM_018918.2			NP_061741.1
	AF152325.1			AAD43719.1

Target Gene Details

• Entrez Gene ID: 56109
• Gene Name: protocadherin gamma subfamily A, 6
• Gene Aliases: PCDH-GAMMA-A6
• Location: Chr.5:141374084-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA6	NM_018919.2			NP_061742.1
	AB209178.1			BAD92415.1
	AF152326.1			AAD43720.1
	BC146651.1

Target Gene Details

• Entrez Gene ID: 56108
• Gene Name: protocadherin gamma subfamily A, 7
• Gene Aliases: PCDH-GAMMA-A7
• Location: Chr.5:141382739-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA7	NM_018920.3			NP_061743.1
	AB208958.1			BAD92195.1
	AF152327.1			AAD43721.1

Target Gene Details

• Entrez Gene ID: 9708
• Gene Name: protocadherin gamma subfamily A, 8
• Gene Aliases: PCDH-GAMMA-A8
• Location: Chr.5:141391916-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA8	NM_032088.1			NP_114477.1
	AF152328.1			AAD43722.1

Target Gene Details

• Entrez Gene ID: 56104
• Gene Name: protocadherin gamma subfamily B, 1
• Gene Aliases: PCDH-GAMMA-B1
• Location: Chr.5:141350261-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGB1	NM_018922.2			NP_061745.1
	AF152330.1			AAD43724.1

Target Gene Details

• Entrez Gene ID: 56103
• Gene Name: protocadherin gamma subfamily B, 2
• Gene Aliases: PCDH-GAMMA-B2
• Location: Chr.5:141360136-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGB2	NM_018923.2			NP_061746.1
	AF152331.1			AAD43725.1

Target Gene Details

• Entrez Gene ID: 56102
• Gene Name: protocadherin gamma subfamily B, 3
• Gene Aliases: PCDH-GAMMA-B3
• Location: Chr.5:141370264-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGB3	NM_018924.4			NP_061747.2
	AF152332.1			AAD43726.1
	BC150172.1

Target Gene Details

• Entrez Gene ID: 8641
• Gene Name: protocadherin gamma subfamily B, 4
• Gene Aliases: CDH20, FIB2, PCDH-GAMMA-B4
• Location: Chr.5:141387885-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGB4	NM_003736.2			NP_003727.1
	AF152333.1			AAD43727.1

Target Gene Details

• Entrez Gene ID: 56101
• Gene Name: protocadherin gamma subfamily B, 5
• Gene Aliases: PCDH-GAMMA-B5
• Location: Chr.5:141398128-141512979 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGB5	NM_018925.2	1	519	NP_061748.1
	NM_032099.1	1	519	NP_115270.1
	AF152334.1	1	519	AAD43728.1
	AF152521.1	1	519	AAD43781.1
	BC093877.1	1	610	AAH93877.1
	BC093879.1	1	610	AAH93879.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv2759382	Chr.5:140777355 - 141449115 on Build GRCh38	Gain	PCDHGA11 PCDHGB8P PCDHGB7 PCDHA8 PCDHGA2 PCDHA4 PCDHGA10 PCDHAC2 PCDHB1 PCDHA11 PCDHB11 PCDHB8 PCDHB6 PCDHB10 PCDHGA3 PCDHGB1 PCDHB9 PCDHGB6 PCDHGB3 PCDHGA9 PCDHGA5 PCDHA5 PCDHA10 PCDHB4 PCDHGB5 TAF7 LOC101926905 PCDHGA1 PCDHGA7 PCDHB14 PCDHB7 PCDHA7 PCDHA13 PCDHB17P SLC25A2 PCDHAC1 PCDHGA4 PCDHA9 PCDHGA8 PCDHB18P PCDHGB4 PCDHA12 PCDHB15 PCDHGA12 PCDHB16 PCDHB12 PCDHA2 PCDHGA6 PCDHB13 PCDHGB2 PCDHA6 PCDHA3 PCDHB5 PCDHA1 PCDHB2 PCDHB19P PCDHB3
nsv968259	Chr.5:141397884 - 141398741 on Build GRCh38	Duplication	PCDHGA3 PCDHGB1 PCDHGA6 PCDHGB2 PCDHGB3 PCDHGA2 PCDHGA4 PCDHGA5 PCDHGA8 PCDHGB5 PCDHGB4 PCDHGA1 PCDHGA7
nsv599922	Chr.5:141341879 - 141416532 on Build GRCh38	Loss	PCDHGA3 PCDHGB1 PCDHGA6 PCDHGB2 PCDHGB6 PCDHGB3 PCDHGA2 PCDHGA4 PCDHGA9 PCDHGA5 PCDHGA10 PCDHGA8 PCDHGB5 PCDHGB4 PCDHGA1 PCDHGA7
nsv519627	Chr.5:141392860 - 141427689 on Build GRCh38	Loss	PCDHGA11 PCDHGB8P PCDHGA3 PCDHGB1 PCDHGB7 PCDHGA6 PCDHGB2 PCDHGB6 PCDHGB3 PCDHGA2 PCDHGA4 PCDHGA9 PCDHGA5 PCDHGA10 PCDHGA8 PCDHGB5 PCDHGB4 PCDHGA1 PCDHGA7

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

homophilic cell adhesion via plasma membrane adhesion molecules
endosome to lysosome transport
lipid tube assembly involved in organelle fusion
cell adhesion
calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules
biological_process

Function(s)

calcium ion binding
molecular_function