Hs02734029_cn

• Gene Symbol: SAPCD2
• Assay Reference Genome Location: Chr.9:137066345 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 89958
• Gene Name: suppressor APC domain containing 2
• Gene Aliases: C9orf140, p42.3
• Location: Chr.9:137062127-137070576 on Build GRCh38
• Assay Gene Location: Overlaps Intron 2 - Exon 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SAPCD2	NM_178448.3			NP_848543.2
	XM_011519180.2			XP_011517482.1
	BC048267.1			AAH48267.1
	BX332104.2
	DQ150361.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13007n54	Chr.9:136966179 - 137173890 on Build GRCh38	Loss	DPP7 MAN1B1 LCNL1 CLIC3 ABCA2 NPDC1 GRIN1 SAPCD2 C9orf142 TMEM210 UAP1L1 PTGDS LRRC26 FUT7 C9orf139 ENTPD2 LOC101930307 MAN1B1-AS1 MIR3621 PRR31
nsv831761	Chr.9:137049674 - 137166473 on Build GRCh38	Loss	UAP1L1 DPP7 MAN1B1 ENTPD2 GRIN1 SAPCD2 LOC101930307 MAN1B1-AS1
nsv616006	Chr.9:137057859 - 137083633 on Build GRCh38	Loss	UAP1L1 SAPCD2
nsv524322	Chr.9:136795692 - 137482216 on Build GRCh38	Loss	SLC34A3 STPG3 ABCA2 MAMDC4 EDF1 TMEM203 LOC101930307 MIR3621 CCDC183-AS1 LCNL1 CLIC3 C8G MIR7114 FAM166A C9orf142 C9orf173-AS1 NDOR1 CCDC183 TRAF2 ENTPD2 C9orf172 MIR4292 ANAPC2 EXD3 MAN1B1 NOXA1 SSNA1 NPDC1 FBXW5 GRIN1 TMEM210 UAP1L1 TOR4A PTGDS TPRN C9orf139 PNPLA7 ENTPD8 MAN1B1-AS1 PRR31 TUBB4B DPP7 RNF208 SAPCD2 RNF224 NRARP LRRC26 FUT7 NELFB RABL6 NSMF MIR4479 LCN12 CYSRT1 PHPT1
nsv951206	Chr.9:136944849 - 137114548 on Build GRCh38	Deletion	DPP7 MAN1B1 LCNL1 CLIC3 C8G ABCA2 NPDC1 SAPCD2 C9orf142 UAP1L1 PTGDS FUT7 C9orf139 ENTPD2 LOC101930307 MAN1B1-AS1 LCN12 PRR31
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	LOC100128593 ABCA2 MAMDC4 EDF1 NOTCH1 LOC101930307 MIR3621 CCDC183-AS1 LCN8 CARD9 LCNL1 CLIC3 C8G SNAPC4 HSPC324 SNORA17A C9orf142 EGFL7 SDCCAG3 CCDC183 TRAF2 LCN15 ENTPD2 C9orf172 SEC16A INPP5E MIR4292 FAM69B LINC01451 MAN1B1 NPDC1 FBXW5 GRIN1 MIR4673 TMEM210 UAP1L1 SNHG7 PTGDS AGPAT2 C9orf139 NALT1 PMPCA DNLZ LCN6 MAN1B1-AS1 PRR31 TMEM141 MIR4674 DPP7 MIR6722 SAPCD2 LCN10 C9orf163 MIR126 LRRC26 FUT7 RABL6 SNORA17B MIR4479 LCN12 PHPT1
nsv616005	Chr.9:137036493 - 137173890 on Build GRCh38	Loss	DPP7 MAN1B1 NPDC1 GRIN1 SAPCD2 TMEM210 UAP1L1 LRRC26 C9orf139 ENTPD2 LOC101930307 MAN1B1-AS1 MIR3621
esv2761561	Chr.9:137030185 - 137191593 on Build GRCh38	Gain	DPP7 MAN1B1 SSNA1 NPDC1 GRIN1 SAPCD2 TMEM210 UAP1L1 LRRC26 FUT7 C9orf139 ENTPD2 LOC101930307 MAN1B1-AS1 ANAPC2 MIR3621
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	LOC100128593 SLC34A3 STPG3 ABCA2 MAMDC4 EDF1 TMEM203 LOC101930307 MIR3621 CCDC183-AS1 LCN8 LCNL1 CLIC3 C8G FAM166A HSPC324 SNORA17A C9orf142 EGFL7 C9orf173-AS1 NDOR1 CCDC183 TRAF2 LCN15 ENTPD2 C9orf172 MIR4292 FAM69B ANAPC2 LINC01451 EXD3 MAN1B1 SSNA1 NPDC1 FBXW5 GRIN1 TMEM210 UAP1L1 SNHG7 TOR4A PTGDS TPRN AGPAT2 C9orf139 LCN6 MAN1B1-AS1 PRR31 TMEM141 TUBB4B DPP7 MIR6722 RNF208 SAPCD2 LCN10 RNF224 NRARP MIR126 LRRC26 FUT7 NELFB RABL6 SNORA17B MIR4479 LCN12 CYSRT1 PHPT1
nsv982354	Chr.9:137057355 - 137073859 on Build GRCh38	Duplication	SAPCD2

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation