Assay Details
Target Gene Details
Entrez Gene ID: | 583 |
Gene Name: | Bardet-Biedl syndrome 2 |
Gene Aliases: |
BBS, RP74 |
Location: |
Chr.16:56470403-56520096 on Build GRCh38 |
Assay Gene Location: | Within Intron 17 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
BBS2 | XM_005256080.2 | XP_005256137.1 |
Target Gene Details
Entrez Gene ID: | 55239 |
Gene Name: | 2-oxoglutarate and iron dependent oxygenase domain containing 1 |
Gene Aliases: |
TPA1 |
Location: |
Chr.16:56451480-56477495 on Build GRCh38 |
Assay Gene Location: | Within Exon 14 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
OGFOD1 | NM_001324357.1 | 13 | 1817 | NP_001311286.1 |
NM_001324358.1 | 13 | 1999 | NP_001311287.1 | |
NM_001324359.1 | 13 | 1612 | NP_001311288.1 | |
NM_001324360.1 | 13 | 1855 | NP_001311289.1 | |
NM_001324361.1 | 13 | 1577 | NP_001311290.1 | |
NM_001324362.1 | 13 | 1549 | NP_001311291.1 | |
NM_001324363.1 | 12 | 1706 | NP_001311292.1 | |
NM_018233.3 | 13 | 1788 | NP_060703.3 | |
AB046832.1 | 13 | 1711 | ||
AK001688.1 | 13 | 1549 | BAA91838.1 | |
AK022130.1 | 13 | 1761 | BAB13967.1 | |
AK022752.1 | 13 | 1778 | BAB14226.1 | |
AK024314.1 | 10 | 1295 | BAB14880.1 | |
AK304584.1 | 13 | 1703 | ||
BC032919.1 | 13 | 1759 | AAH32919.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv833243 | Chr.16:56375371 - 56549461 on Build GRCh38 | Gain | OGFOD1 NUDT21 AMFR BBS2 |
More Information
Additional Information:
For this assay, SNP(s) [rs117876365] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Exonic Intronic Non-exonic DGV Variation |