Assay Details
Target Gene Details
Entrez Gene ID: | 29101 |
Gene Name: | SSU72 homolog, RNA polymerase II CTD phosphatase |
Gene Aliases: |
HSPC182, PNAS-120 |
Location: |
Chr.1:1541673-1574882 on Build GRCh38 |
Assay Gene Location: | Within Intron 2 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SSU72 | NM_014188.2 | NP_054907.1 | ||
AF161530.1 | AAF29145.1 | |||
AF277178.1 | AAK07538.1 | |||
AJ276409.1 | CAC81713.1 | |||
AK001809.1 | BAA91921.1 | |||
AK023110.1 | 2 | 288 | BAB14410.1 | |
AK291324.1 | 2 | 336 | ||
AK297505.1 | ||||
AK310067.1 | ||||
BC008070.2 | AAH08070.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv545000 | Chr.1:1421170 - 1573654 on Build GRCh38 | Loss | LOC102724312 TMEM88B ATAD3B ATAD3A SSU72 TMEM240 ATAD3C LOC107985729 ANKRD65 VWA1 |
nsv10161 | Chr.1:776731 - 1777210 on Build GRCh38 | Gain+Loss | LINC01342 MIR6808 CPSF3L ATAD3B KLHL17 ATAD3C NOC2L LOC107985729 CDK11A SSU72 MIR200B FAM87B LOC107985728 PUSL1 HES4 LOC102724312 SAMD11 LINC01128 MIR200A LOC100288069 NADK CDK11B TMEM88B UBE2J2 TNFRSF18 MIB2 ATAD3A SLC35E2B TTLL10-AS1 SDF4 FAM132A CPTP MIR6726 LINC00115 ISG15 MXRA8 LOC105378948 PLEKHN1 CCNL2 MIR429 MMP23A DVL1 ANKRD65 TTLL10 C1orf159 TMEM240 AGRN FAM41C FNDC10 LOC148413 TNFRSF4 MRPL20 LOC100287934 AURKAIP1 SCNN1D LOC284600 TAS1R3 ACAP3 MMP23B PERM1 RNF223 LOC100288175 LOC100130417 SLC35E2 B3GALT6 MIR6727 VWA1 |
nsv482937 | Chr.1:10001 - 2368561 on Build GRCh38 | Loss | LINC01342 MIR6808 ATAD3B KLHL17 LOC100134822 ATAD3C FAM138A MIR200B PUSL1 PRKCZ HES4 LOC102724312 CDK11B TMEM88B UBE2J2 WASH7P MIB2 SLC35E2B TTLL10-AS1 LOC100129534 SDF4 MORN1 ISG15 MXRA8 LOC105378948 MIR429 DVL1 LOC105378589 OR4F5 ANKRD65 SKI TTLL10 TMEM240 AGRN FAM41C MIR6723 FNDC10 DDX11L1 MRPL20 MIR6859-1 LOC100287934 MIR1302-2 LOC100506504 FAAP20 SCNN1D TAS1R3 RNF223 LOC100288175 LOC105378947 MIR6727 LOC729737 CPSF3L NOC2L LOC107985729 OR4F29 LOC107984841 CDK11A LOC100133331 LOC100132287 TMEM52 SSU72 FAM87B LOC107985728 CFAP74 SAMD11 LINC01128 MIR200A LOC101928626 LOC100288069 NADK MIR6859-2 LOC105378949 MTND1P23 TNFRSF18 ATAD3A OR4F16 FAM132A CPTP MIR6726 LINC00115 PLEKHN1 MTND2P28 CCNL2 MMP23A C1orf159 LOC148413 TNFRSF4 LOC105378591 LOC105378592 AURKAIP1 GABRD CALML6 LOC284600 ACAP3 MMP23B PERM1 GNB1 LOC100130417 SLC35E2 LOC102725121 B3GALT6 VWA1 |
nsv950452 | Chr.1:1106921 - 1637538 on Build GRCh38 | Deletion | FAM132A CPTP MIR6726 LINC01342 MIR6808 CPSF3L ATAD3B MXRA8 CCNL2 MIR429 ATAD3C DVL1 LOC107985729 ANKRD65 TTLL10 C1orf159 SSU72 MIR200B TMEM240 FNDC10 LOC148413 TNFRSF4 PUSL1 MRPL20 LOC102724312 MIR200A AURKAIP1 SCNN1D CDK11B TMEM88B UBE2J2 TAS1R3 ACAP3 MMP23B TNFRSF18 MIB2 ATAD3A TTLL10-AS1 B3GALT6 MIR6727 VWA1 SDF4 |
nsv1011818 | Chr.1:1394332 - 1575421 on Build GRCh38 | Gain | LOC102724312 ATAD3B CCNL2 ATAD3C LOC107985729 ANKRD65 TMEM88B ATAD3A SSU72 TMEM240 LOC148413 VWA1 MRPL20 |
esv2758913 | Chr.1:1389149 - 2092899 on Build GRCh38 | Gain+Loss | ATAD3B CCNL2 MMP23A ATAD3C LOC107985729 LOC105378589 CDK11A ANKRD65 TMEM52 SSU72 TMEM240 FNDC10 LOC148413 CFAP74 LOC105378591 PRKCZ MRPL20 LOC102724312 NADK GABRD CALML6 LOC105378949 CDK11B TMEM88B MMP23B GNB1 MIB2 ATAD3A SLC35E2B SLC35E2 VWA1 |
More Information
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |