Hs02645583_cn

• Gene Symbol: SPTY2D1
• Assay Reference Genome Location: Chr.11:18609892 on build GRCh38
• Cytoband: 11p15.1

Target Gene Details

• Entrez Gene ID: 144108
• Gene Name: SPT2 chromatin protein domain containing 1
• Gene Aliases: Spt2
• Location: Chr.11:18606401-18634823 on Build GRCh38
• Assay Gene Location: Within Exon 7

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SPTY2D1	NM_194285.2	6	2243	NP_919261.2
	XM_011519919.2	6	2101	XP_011518221.1
	AF452716.1			AAP13351.1
	AK096694.1	2	147
	AL834393.1	3	293	CAD39055.1
	BC036844.1	4	863	AAH36844.1
	BC056261.1			AAH56261.1
	BX538046.1	4	622	CAD97985.1
	BX641102.1	6	2144	CAE46047.1
	BX647798.1	6	2243
	BX648114.1	4	1822	CAH10772.1
	BX648478.1	6	2165
	CR749626.1	4	1686	CAH18420.1

Target Gene Details

• Entrez Gene ID: 100506540
• Gene Name: SPTY2D1 antisense RNA 1
• Gene Aliases: -
• Location: Chr.11:18599804-18610255 on Build GRCh38
• Assay Gene Location: Within Exon 5

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SPTY2D1-AS1	NR_038360.1	5	1074
	AK097654.1	5	1074

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv553633	Chr.11:18290154 - 19036904 on Build GRCh38	Gain	UEVLD TSG101 SPTY2D1 LDHC TMEM86A MIR3159 PTPN5 MRGPRX1 HPS5 IGSF22 LDHA SPTY2D1-AS1 GTF2H1 LDHAL6A
nsv516413	Chr.11:18606871 - 18622211 on Build GRCh38	Loss	SPTY2D1 SPTY2D1-AS1

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

chromatin/chromatin-binding, or -regulatory protein

Gene Ontology Categories:

Process(es)

nucleosome assembly
transcription, DNA-templated
regulation of transcription, DNA-templated
regulation of chromatin assembly
histone exchange

Function(s)

RNA polymerase I core binding
DNA binding
histone binding