Hs02581607_cn

• Gene Symbol: PCDHGA1
• Assay Reference Genome Location: Chr.5:141432270 on build GRCh38
• Cytoband: 5q31.3

Target Gene Details

• Entrez Gene ID: 56114
• Gene Name: protocadherin gamma subfamily A, 1
• Gene Aliases: PCDH-GAMMA-A1
• Location: Chr.5:141330685-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA1	NM_018912.2			NP_061735.1
	AF152318.1			AAD43712.1

Target Gene Details

• Entrez Gene ID: 56106
• Gene Name: protocadherin gamma subfamily A, 10
• Gene Aliases: PCDH-GAMMA-A10
• Location: Chr.5:141413176-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA10	NM_018913.2			NP_061736.1
	AF152319.1			AAD43713.1

Target Gene Details

• Entrez Gene ID: 56105
• Gene Name: protocadherin gamma subfamily A, 11
• Gene Aliases: PCDH-GAMMA-A11
• Location: Chr.5:141420970-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA11	NM_018914.2			NP_061737.1
	NM_032092.1			NP_114481.1
	AF152320.1			AAD43714.1
	AF152504.1			AAD43765.1
	BC136781.1
	BC171774.1

Target Gene Details

• Entrez Gene ID: 26025
• Gene Name: protocadherin gamma subfamily A, 12
• Gene Aliases: CDH21, FIB3, PCDH-GAMMA-A12
• Location: Chr.5:141430591-141512979 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA12	NM_003735.2	1	1680	NP_003726.1
	NM_032094.1	1	1680	NP_115265.1
	AB011160.1	1	1653
	AF152321.1	1	1511	AAD43715.1
	AF152506.1	1	1511	AAD43767.1
	AY358946.1	1	1880	AAQ89305.1

Target Gene Details

• Entrez Gene ID: 56113
• Gene Name: protocadherin gamma subfamily A, 2
• Gene Aliases: PCDH-GAMMA-A2
• Location: Chr.5:141338760-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA2	NM_018915.3			NP_061738.1
	AF152322.1			AAD43716.1

Target Gene Details

• Entrez Gene ID: 56112
• Gene Name: protocadherin gamma subfamily A, 3
• Gene Aliases: PCDH-GAMMA-A3
• Location: Chr.5:141344034-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA3	NM_018916.3			NP_061739.2
	AB208927.1			BAD92164.1
	AF152323.1			AAD43717.1

Target Gene Details

• Entrez Gene ID: 56111
• Gene Name: protocadherin gamma subfamily A, 4
• Gene Aliases: PCDH-GAMMA-A4
• Location: Chr.5:141355025-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA4	NM_018917.3			NP_061740.2
	AF152324.1			AAD43718.1

Target Gene Details

• Entrez Gene ID: 56110
• Gene Name: protocadherin gamma subfamily A, 5
• Gene Aliases: CDH-GAMMA-A5, ME3, PCDH-GAMMA-A5
• Location: Chr.5:141364331-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA5	NM_018918.2			NP_061741.1
	AF152325.1			AAD43719.1

Target Gene Details

• Entrez Gene ID: 56109
• Gene Name: protocadherin gamma subfamily A, 6
• Gene Aliases: PCDH-GAMMA-A6
• Location: Chr.5:141374084-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA6	NM_018919.2			NP_061742.1
	AB209178.1			BAD92415.1
	AF152326.1			AAD43720.1
	BC146651.1

Target Gene Details

• Entrez Gene ID: 56108
• Gene Name: protocadherin gamma subfamily A, 7
• Gene Aliases: PCDH-GAMMA-A7
• Location: Chr.5:141382739-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA7	NM_018920.3			NP_061743.1
	AB208958.1			BAD92195.1
	AF152327.1			AAD43721.1

Target Gene Details

• Entrez Gene ID: 9708
• Gene Name: protocadherin gamma subfamily A, 8
• Gene Aliases: PCDH-GAMMA-A8
• Location: Chr.5:141391916-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA8	NM_032088.1			NP_114477.1
	AF152328.1			AAD43722.1

Target Gene Details

• Entrez Gene ID: 56107
• Gene Name: protocadherin gamma subfamily A, 9
• Gene Aliases: PCDH-GAMMA-A9
• Location: Chr.5:141402953-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA9	NM_018921.2			NP_061744.1
	AF152329.1			AAD43723.1

Target Gene Details

• Entrez Gene ID: 56104
• Gene Name: protocadherin gamma subfamily B, 1
• Gene Aliases: PCDH-GAMMA-B1
• Location: Chr.5:141350261-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGB1	NM_018922.2			NP_061745.1
	AF152330.1			AAD43724.1

Target Gene Details

• Entrez Gene ID: 56103
• Gene Name: protocadherin gamma subfamily B, 2
• Gene Aliases: PCDH-GAMMA-B2
• Location: Chr.5:141360136-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGB2	NM_018923.2			NP_061746.1
	AF152331.1			AAD43725.1

Target Gene Details

• Entrez Gene ID: 56102
• Gene Name: protocadherin gamma subfamily B, 3
• Gene Aliases: PCDH-GAMMA-B3
• Location: Chr.5:141370264-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGB3	NM_018924.4			NP_061747.2
	AF152332.1			AAD43726.1
	BC150172.1

Target Gene Details

• Entrez Gene ID: 8641
• Gene Name: protocadherin gamma subfamily B, 4
• Gene Aliases: CDH20, FIB2, PCDH-GAMMA-B4
• Location: Chr.5:141387885-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGB4	NM_003736.2			NP_003727.1
	AF152333.1			AAD43727.1

Target Gene Details

• Entrez Gene ID: 56101
• Gene Name: protocadherin gamma subfamily B, 5
• Gene Aliases: PCDH-GAMMA-B5
• Location: Chr.5:141398128-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGB5	NM_018925.2			NP_061748.1
	AF152334.1			AAD43728.1

Target Gene Details

• Entrez Gene ID: 56100
• Gene Name: protocadherin gamma subfamily B, 6
• Gene Aliases: PCDH-GAMMA-B6
• Location: Chr.5:141408203-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGB6	NM_018926.2			NP_061749.1
	AF152335.1			AAD43729.1

Target Gene Details

• Entrez Gene ID: 56099
• Gene Name: protocadherin gamma subfamily B, 7
• Gene Aliases: ME6, PCDH-GAMMA-B7
• Location: Chr.5:141417647-141512981 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGB7	NM_018927.3			NP_061750.1
	AF152336.1			AAD43730.1
	BC051788.2			AAH51788.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv2759382	Chr.5:140777355 - 141449115 on Build GRCh38	Gain	PCDHA1 PCDHB8 PCDHGA10 PCDHA10 SLC25A2 PCDHB15 PCDHGA4 PCDHA7 PCDHB7 PCDHB17P PCDHAC1 PCDHB14 PCDHB5 PCDHB6 PCDHA8 PCDHGA1 PCDHGA3 PCDHA12 PCDHB2 PCDHGA12 PCDHGA7 PCDHA6 PCDHGB2 PCDHB10 PCDHGA5 PCDHGA6 PCDHB9 PCDHGA8 PCDHA9 PCDHGA11 PCDHB19P PCDHA13 PCDHB11 PCDHA2 PCDHGA2 PCDHGB6 PCDHGB8P PCDHGA9 PCDHGB5 PCDHB1 PCDHB12 TAF7 PCDHGB1 PCDHA3 PCDHB13 PCDHAC2 PCDHB3 LOC101926905 PCDHA11 PCDHA5 PCDHB4 PCDHGB7 PCDHA4 PCDHGB3 PCDHB18P PCDHB16 PCDHGB4
esv2730847	Chr.5:141415403 - 141432967 on Build GRCh38	Deletion	PCDHGA10 PCDHGA4 PCDHGA12 PCDHGA2 PCDHGA7 PCDHGB6 PCDHGB8P PCDHGA9 PCDHGB2 PCDHGB5 PCDHGA5 PCDHGA6 PCDHGB7 PCDHGB3 PCDHGA8 PCDHGA11 PCDHGB1 PCDHGB4 PCDHGA1 PCDHGA3

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

homophilic cell adhesion via plasma membrane adhesion molecules
endosome to lysosome transport
lipid tube assembly involved in organelle fusion
cell adhesion
calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules
biological_process

Function(s)

calcium ion binding
poly(A) RNA binding
molecular_function