Assay Details
Target Gene Details
Entrez Gene ID: | 1973 |
Gene Name: | eukaryotic translation initiation factor 4A1 |
Gene Aliases: |
DDX2A, EIF-4A, EIF4A, eIF-4A-I, eIF4A-I |
Location: |
Chr.17:7572706-7579006 on Build GRCh38 |
Assay Gene Location: | Within Exon 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
EIF4A1 | NM_001204510.1 | 1 | 121 | NP_001191439.1 |
NM_001416.3 | 1 | 121 | NP_001407.1 | |
AK130082.1 | ||||
AK289453.1 | ||||
AK291971.1 | ||||
AK296664.1 | ||||
AK297916.1 | ||||
AK303222.1 | ||||
AK303599.1 | ||||
AK309274.1 | ||||
AK312630.1 | ||||
BC009585.1 | AAH09585.1 | |||
BC073752.1 | AAH73752.1 | |||
BG284868.1 | 1 | 134 | ||
BT019880.1 | AAV38683.1 | |||
BT019881.1 | AAV38684.1 | |||
D13748.1 | BAA02897.1 |
Target Gene Details
Entrez Gene ID: | 100533955 |
Gene Name: | SENP3-EIF4A1 readthrough (NMD candidate) |
Gene Aliases: |
- |
Location: |
Chr.17:7561992-7579006 on Build GRCh38 |
Assay Gene Location: | Within Exon 12 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SENP3-EIF4A1 | NR_037926.1 | 12 | 2547 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
esv2422288 | Chr.17:6789933 - 7646709 on Build GRCh38 | Deletion | TMEM256-PLSCR3 PLSCR3 SOX15 NLGN2 FXR2 TMEM256 CTDNEP1 SPEM1 ALOX12P2 ZBTB4 MPDU1 EIF4A1 ATP1B2 ALOX12 DVL2 PHF23 ACADVL SLC35G6 ELP5 GPS2 SENP3-EIF4A1 CD68 SLC2A4 SNORD10 TMEM102 MIR497HG FBXO39 POLR2A BCL6B RNASEK-C17orf49 ALOX12-AS1 SHBG MIR195 NEURL4 TNFSF12-TNFSF13 ASGR2 C17orf49 SENP3 GABARAP CLDN7 TNK1 LOC100996842 ACAP1 CHRNB1 SNORA67 SAT2 C17orf74 SLC16A13 KCTD11 TNFSF12 MIR324 TMEM95 EIF5A SLC16A11 TEKT1 TNFSF13 RNASEK LOC107983988 SNORA48 MIR497 ASGR1 DLG4 CLEC10A FGF11 YBX2 |
nsv574322 | Chr.17:7010333 - 7689462 on Build GRCh38 | Loss | TMEM256-PLSCR3 PLSCR3 SOX15 NLGN2 FXR2 TMEM256 CTDNEP1 SPEM1 WRAP53 ZBTB4 MPDU1 EIF4A1 ATP1B2 ALOX12 DVL2 PHF23 ACADVL SLC35G6 ELP5 GPS2 SENP3-EIF4A1 CD68 SLC2A4 SNORD10 TMEM102 MIR497HG POLR2A BCL6B RNASEK-C17orf49 ALOX12-AS1 SHBG MIR195 NEURL4 TNFSF12-TNFSF13 ASGR2 C17orf49 SENP3 GABARAP CLDN7 TNK1 LOC100996842 ACAP1 CHRNB1 SNORA67 SAT2 C17orf74 SLC16A13 KCTD11 TP53 TNFSF12 MIR324 TMEM95 EIF5A SLC16A11 TNFSF13 RNASEK LOC107983988 SNORA48 MIR497 ASGR1 DLG4 CLEC10A FGF11 YBX2 |
More Information
Set Membership: |
Intragenic Exonic DGV Variation |