Assay Details
Target Gene Details
Entrez Gene ID: | 57491 |
Gene Name: | aryl-hydrocarbon receptor repressor |
Gene Aliases: |
AHH, AHHR, bHLHe77 |
Location: |
Chr.5:304176-438291 on Build GRCh38 |
Assay Gene Location: | Within Intron 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
AHRR | NM_001242412.1 | NP_001229341.1 | ||
NM_020731.4 | NP_065782.2 | |||
AB033060.1 | ||||
BC151852.1 | ||||
BC152406.1 | ||||
EU293605.1 |
Target Gene Details
Entrez Gene ID: | 10016 |
Gene Name: | programmed cell death 6 |
Gene Aliases: |
ALG-2, ALG2, PEF1B |
Location: |
Chr.5:271621-314974 on Build GRCh38 |
Assay Gene Location: | Within Exon 5 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
PDCD6 | NM_001267556.1 | 4 | 360 | NP_001254485.1 |
NM_001267557.1 | NP_001254486.1 | |||
NM_001267558.1 | 5 | 275 | NP_001254487.1 | |
NM_001267559.1 | NP_001254488.1 | |||
NM_013232.3 | 4 | 360 | NP_037364.1 | |
AF035606.1 | 4 | 386 | AAC27697.1 | |
AK001917.1 | 4 | 311 | ||
AK223366.1 | 4 | 360 | BAD97086.1 | |
AK308872.1 | 3 | 258 | ||
AK315370.1 | 4 | 360 | ||
BC012384.1 | 4 | 328 | AAH12384.1 | |
BC106706.2 | 4 | 309 | AAI06707.1 | |
BC110291.1 | 4 | 324 | AAI10292.1 | |
BG390506.1 | ||||
BI553617.1 | 4 | 362 | ||
BT020072.1 | 4 | 260 | AAV38875.1 | |
CR983268.1 | ||||
DB495449.1 | 5 | 260 | ||
U58773.1 | 4 | 291 | AAF14336.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
esv2759315 | Chr.5:17263 - 595840 on Build GRCh38 | Loss | AHRR SDHA HRAT5 EXOC3 MIR4456 EXOC3-AS1 PP7080 SLC9A3 LOC100288152 PLEKHG4B CCDC127 LRRC14B PDCD6 |
esv3894107 | Chr.5:81322 - 801057 on Build GRCh38 | Gain | AHRR SDHA LOC100996325 ZDHHC11B CEP72 HRAT5 EXOC3 MIR4456 EXOC3-AS1 TPPP ZDHHC11 PP7080 SLC9A3 LOC100288152 PLEKHG4B LOC101929895 CCDC127 LRRC14B PDCD6 |
nsv428458 | Chr.5:93781 - 338972 on Build GRCh38 | Loss | AHRR SDHA PLEKHG4B HRAT5 CCDC127 LRRC14B PDCD6 |
esv2752083 | Chr.5:28951 - 346521 on Build GRCh38 | Gain | AHRR SDHA PLEKHG4B HRAT5 CCDC127 LRRC14B PDCD6 |
esv3603741 | Chr.5:301153 - 312236 on Build GRCh38 | Gain | AHRR PDCD6 |
nsv1030767 | Chr.5:154674 - 457840 on Build GRCh38 | Gain | AHRR SDHA PLEKHG4B HRAT5 EXOC3 CCDC127 LRRC14B EXOC3-AS1 PDCD6 |
nsv461887 | Chr.5:299506 - 438449 on Build GRCh38 | Gain | AHRR PDCD6 |
More Information
Set Membership: |
Intragenic Exonic Intronic Non-exonic DGV Variation |