Assay Details
Target Gene Details
Entrez Gene ID: | 6529 |
Gene Name: | solute carrier family 6 member 1 |
Gene Aliases: |
GABATHG, GABATR, GAT1, MAE |
Location: |
Chr.3:10992718-11039249 on Build GRCh38 |
Assay Gene Location: | Overlaps Exon 6 - Intron 6 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SLC6A1 | NM_003042.3 | NP_003033.3 | ||
XM_005265410.4 | XP_005265467.1 | |||
XM_005265411.4 | XP_005265468.1 | |||
XM_006713306.3 | XP_006713369.1 | |||
XM_011534025.2 | XP_011532327.1 | |||
XM_011534027.2 | XP_011532329.1 | |||
XM_017007071.1 | XP_016862560.1 | |||
XM_017007072.1 | XP_016862561.1 | |||
AK295702.1 | ||||
BC033904.1 | AAH33904.1 | |||
X54673.1 | CAA38484.1 |
Target Gene Details
Entrez Gene ID: | 100874090 |
Gene Name: | SLC6A1 antisense RNA 1 |
Gene Aliases: |
- |
Location: |
Chr.3:11006098-11019224 on Build GRCh38 |
Assay Gene Location: | Within Intron 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SLC6A1-AS1 | NR_046647.1 | |||
DA771774.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv518622 | Chr.3:11018310 - 11024121 on Build GRCh38 | Loss | SLC6A1-AS1 SLC6A1 |
nsv436362 | Chr.3:10048344 - 11860564 on Build GRCh38 | Deletion | BRK1 SLC6A11 VGLL4 HRH1 MIR885 LINC00852 SEC13 SLC6A1-AS1 GHRLOS TAMM41 VHL SLC6A1 LOC101927467 GHRL TATDN2 ATP2B2-IT2 FANCD2OS FANCD2 ATP2B2 ATG7 MIR378B LINC00606 IRAK2 |
nsv508209 | Chr.3:11015092 - 11076380 on Build GRCh38 | Deletion | SLC6A1-AS1 SLC6A1 LOC101927467 |
dgv762e201 | Chr.3:10008967 - 11913136 on Build GRCh38 | Deletion | FANCD2P2 VGLL4 LINC00852 SEC13 SLC6A1-AS1 GHRLOS TAMM41 TATDN2 ATP2B2-IT2 FANCD2OS ATP2B2 ATG7 MIR378B IRAK2 BRK1 SLC6A11 HRH1 MIR885 CIDECP VHL SLC6A1 LOC101927467 GHRL LOC401052 FANCD2 EMC3 LINC00606 |
nsv1121603 | Chr.3:10071433 - 11889279 on Build GRCh38 | Deletion | FANCD2P2 BRK1 SLC6A11 VGLL4 HRH1 MIR885 LINC00852 SEC13 SLC6A1-AS1 GHRLOS TAMM41 VHL SLC6A1 LOC101927467 GHRL TATDN2 ATP2B2-IT2 FANCD2OS FANCD2 ATP2B2 ATG7 MIR378B LINC00606 IRAK2 |
nsv436869 | Chr.3:10064456 - 11877985 on Build GRCh38 | Insertion | FANCD2P2 BRK1 SLC6A11 VGLL4 HRH1 MIR885 LINC00852 SEC13 SLC6A1-AS1 GHRLOS TAMM41 VHL SLC6A1 LOC101927467 GHRL TATDN2 ATP2B2-IT2 FANCD2OS FANCD2 ATP2B2 ATG7 MIR378B LINC00606 IRAK2 |
nsv1073204 | Chr.3:9996548 - 11875005 on Build GRCh38 | Deletion | FANCD2P2 VGLL4 LINC00852 SEC13 SLC6A1-AS1 GHRLOS TAMM41 EMC3-AS1 TATDN2 ATP2B2-IT2 FANCD2OS ATP2B2 ATG7 MIR378B IRAK2 BRK1 SLC6A11 HRH1 MIR885 CIDECP VHL SLC6A1 LOC101927467 GHRL LOC401052 FANCD2 EMC3 LINC00606 |
More Information
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |