Assay Details
Target Gene Details
Entrez Gene ID: | 83903 |
Gene Name: | germ cell associated 2, haspin |
Gene Aliases: |
HASPIN |
Location: |
Chr.17:3723903-3726699 on Build GRCh38 |
Assay Gene Location: | Within Exon 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
GSG2 | NM_031965.2 | 1 | 546 | NP_114171.2 |
AB039834.3 | 1 | 543 | ||
AF289865.1 | 1 | 542 | AAK30300.1 | |
AK056691.1 | 1 | 547 | BAB71255.1 | |
AK292715.1 | 1 | 532 | ||
AK310546.1 | 1 | 546 | ||
AK315247.1 | 1 | 546 | ||
BC016626.1 | 1 | 532 | ||
BC047457.1 | 1 | 527 | AAH47457.1 |
Target Gene Details
Entrez Gene ID: | 3682 |
Gene Name: | integrin subunit alpha E |
Gene Aliases: |
CD103, HUMINAE |
Location: |
Chr.17:3714625-3803766 on Build GRCh38 |
Assay Gene Location: | Within Intron 27 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
ITGAE | NM_002208.4 | NP_002199.3 | ||
XM_011523823.2 | XP_011522125.1 | |||
XM_011523825.2 | XP_011522127.1 | |||
XM_011523827.2 | XP_011522129.1 | |||
XM_011523828.2 | XP_011522130.1 | |||
XM_017024586.1 | XP_016880075.1 | |||
BC113436.1 | ||||
BC117207.1 | ||||
L25851.2 | AAB59359.2 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv574237 | Chr.17:3486822 - 3729542 on Build GRCh38 | Loss | TAX1BP3 ITGAE CTNS ASPA SPATA22 P2RX5-TAX1BP3 TRPV1 P2RX5 EMC6 TRPV3 SHPK GSG2 |
nsv1065489 | Chr.17:2631416 - 3948349 on Build GRCh38 | Gain | MIR1253 ITGAE OR1A2 P2RX5-TAX1BP3 LOC101927911 CLUH OR1D4 P2RX5 EMC6 OR3A4P LOC105371591 CAMKK1 OR3A2 ASPA SPATA22 OR3A3 CCDC92B LOC105371592 OR1A1 GSG2 MIR6776 NCBP3 OR1D5 PAFAH1B1 OR1E1 TRPV3 SHPK OR1G1 TAX1BP3 P2RX1 RAP1GAP2 CTNS OR1D2 TRPV1 ATP2A3 OR1E2 OR3A1 |
nsv469791 | Chr.17:3700760 - 3885899 on Build GRCh38 | Loss | CAMKK1 ITGAE NCBP3 GSG2 |
nsv1055740 | Chr.17:3381841 - 3890153 on Build GRCh38 | Gain | ITGAE NCBP3 P2RX5-TAX1BP3 OR1E1 P2RX5 EMC6 TRPV3 SHPK CAMKK1 TAX1BP3 OR3A2 CTNS ASPA SPATA22 OR3A3 TRPV1 OR1E2 GSG2 |
nsv833342 | Chr.17:3626188 - 3806082 on Build GRCh38 | Loss | TAX1BP3 ITGAE CTNS P2RX5-TAX1BP3 P2RX5 EMC6 SHPK GSG2 |
More Information
Set Membership: |
Intragenic Exonic Intronic Non-exonic DGV Variation |