Assay Details
Target Gene Details
Entrez Gene ID: | 79888 |
Gene Name: | lysophosphatidylcholine acyltransferase 1 |
Gene Aliases: |
AGPAT10, AGPAT9, AYTL2, PFAAP3, lpcat |
Location: |
Chr.5:1461427-1523961 on Build GRCh38 |
Assay Gene Location: | Within Exon 18 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
LPCAT1 | NM_024830.3 | 14 | 2849 | NP_079106.3 |
XM_005248373.3 | 15 | 2757 | XP_005248430.1 | |
XM_011514132.1 | 14 | 2858 | XP_011512434.1 | |
XM_011514134.1 | 14 | 2624 | XP_011512436.1 | |
XM_017009879.1 | 8 | 2160 | XP_016865368.1 | |
AF052162.1 | 1 | 522 | ||
AK022499.1 | 9 | 2028 | BAB14061.1 | |
AK022505.1 | 9 | 2028 | BAB14065.1 | |
AK090444.1 | 12 | 2328 | BAC03425.1 | |
AK095552.1 | 3 | 1599 | ||
AK123603.1 | 1 | 2961 | ||
AL831864.1 | 2 | 1391 | CAD38556.1 | |
BC020166.1 | 12 | 2315 | AAH20166.3 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv461910 | Chr.5:1423790 - 1468172 on Build GRCh38 | Loss | SLC6A3 LPCAT1 |
nsv830187 | Chr.5:1317991 - 1509711 on Build GRCh38 | Loss | LINC01511 SLC6A3 CLPTM1L LPCAT1 |
nsv596629 | Chr.5:457146 - 1468172 on Build GRCh38 | Gain | LOC100288152 TRIP13 MIR4635 CLPTM1L BRD9 SLC6A19 CTD-3080P12.3 CEP72 NKD2 MIR4456 LINC01511 ZDHHC11B ZDHHC11 LOC101929895 TERT LPCAT1 PP7080 TPPP MIR4457 SLC6A3 SLC12A7 SLC6A18 EXOC3 SLC9A3 LOC100506688 LOC100996325 |
dgv9536n54 | Chr.5:1411297 - 1468172 on Build GRCh38 | Loss | SLC6A3 LPCAT1 |
More Information
Set Membership: |
Intragenic Exonic DGV Variation |