Assay Details
Target Gene Details
Entrez Gene ID: | 79680 |
Gene Name: | chromosome 22 open reading frame 29 |
Gene Aliases: |
BOP |
Location: |
Chr.22:19846138-19854848 on Build GRCh38 |
Assay Gene Location: | Within Exon 3 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
C22orf29 | NM_024627.5 | 3 | 2086 | NP_078903.3 |
AK024778.1 | 1 | 1462 | BAB14998.1 | |
AL832509.1 | 3 | 1975 | ||
BC011679.2 | 1 | 1593 | AAH11679.2 | |
BX640785.1 | 2 | 2175 | CAE45875.1 | |
BX640969.1 | 3 | 2055 | CAE45984.1 | |
BX640998.1 | 3 | 2055 | CAE46001.1 |
Target Gene Details
Entrez Gene ID: | 54584 |
Gene Name: | G protein subunit beta 1 like |
Gene Aliases: |
DGCRK3, FKSG1, GY2, WDR14, WDVCF |
Location: |
Chr.22:19788411-19854939 on Build GRCh38 |
Assay Gene Location: | Within Intron 2 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
GNB1L | NM_053004.2 | NP_443730.1 | ||
AB051432.1 | ||||
AF238328.1 | AAG36826.1 | |||
AF301895.1 | AAG53933.1 | |||
AY007378.1 | AAG12162.1 | |||
BC012060.1 | AAH12060.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv834129 | Chr.22:19705617 - 19919068 on Build GRCh38 | Loss | TXNRD2 GP1BB SEPT5 GNB1L TBX1 C22orf29 SEPT5-GP1BB |
nsv953024 | Chr.22:19842078 - 19854877 on Build GRCh38 | Deletion | GNB1L C22orf29 |
esv3893434 | Chr.22:19470889 - 20343372 on Build GRCh38 | Gain | TRMT2A GP1BB MIR6816 LINC00896 MIR1286 SEPT5-GP1BB LOC284865 TXNRD2 CDC45 GNB1L TBX1 DGCR8 UFD1L MIR3618 DGCR6L COMT MIR1306 CCDC188 CLDN5 SEPT5 MIR185 TANGO2 RTN4R LOC101927859 LOC440792 ZDHHC8 LINC00895 MIR4761 RANBP1 ARVCF C22orf29 |
nsv828939 | Chr.22:19696032 - 20324465 on Build GRCh38 | Loss | TRMT2A GP1BB MIR6816 LINC00896 MIR1286 SEPT5-GP1BB LOC284865 TXNRD2 GNB1L TBX1 DGCR8 MIR3618 DGCR6L COMT MIR1306 CCDC188 SEPT5 MIR185 TANGO2 RTN4R LOC440792 ZDHHC8 MIR4761 RANBP1 ARVCF C22orf29 |
nsv828938 | Chr.22:19691069 - 20324465 on Build GRCh38 | Gain | TRMT2A GP1BB MIR6816 LINC00896 MIR1286 SEPT5-GP1BB LOC284865 TXNRD2 GNB1L TBX1 DGCR8 MIR3618 DGCR6L COMT MIR1306 CCDC188 SEPT5 MIR185 TANGO2 RTN4R LOC440792 ZDHHC8 MIR4761 RANBP1 ARVCF C22orf29 |
nsv834130 | Chr.22:19837923 - 19940567 on Build GRCh38 | Loss | TXNRD2 GNB1L C22orf29 |
esv3568260 | Chr.22:19777375 - 19881883 on Build GRCh38 | Loss | TXNRD2 GNB1L TBX1 C22orf29 |
esv3647279 | Chr.22:19719848 - 19878980 on Build GRCh38 | Gain | TXNRD2 GP1BB SEPT5 GNB1L TBX1 C22orf29 SEPT5-GP1BB |
dgv7983n54 | Chr.22:19762002 - 20321870 on Build GRCh38 | Gain | MIR3618 TRMT2A DGCR6L COMT MIR1306 CCDC188 MIR6816 LINC00896 MIR185 TANGO2 RTN4R MIR1286 LOC440792 ZDHHC8 MIR4761 LOC284865 TXNRD2 RANBP1 GNB1L TBX1 ARVCF C22orf29 DGCR8 |
esv3575418 | Chr.22:18161776 - 19963846 on Build GRCh38 | Gain | LOC100996415 GP1BB LINC01311 USP18 MRPL40 DGCR9 DGCR2 LOC642643 GGT3P SEPT5-GP1BB LOC100996401 TXNRD2 CDC45 DGCR5 RIMBP3 GSC2 GNB1L TBX1 DGCR10 UFD1L HIRA LOC729461 DGCR14 COMT CLDN5 SLC25A1 SEPT5 DGCR11 LOC100996432 LINC00895 MIR4761 DGCR6 PI4KAP1 CLTCL1 PRODH TMEM191B TSSK2 LOC102725072 C22orf29 FAM230A C22orf39 |
More Information
Additional Information:
For this assay, SNP(s) [rs75103145] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Exonic Intronic Non-exonic DGV Variation |