Assay Details
Target Gene Details
Entrez Gene ID: | 1013 |
Gene Name: | cadherin 15 |
Gene Aliases: |
CDH14, CDH3, CDHM, MCAD, MRD3 |
Location: |
Chr.16:89171755-89195492 on Build GRCh38 |
Assay Gene Location: | Overlaps Exon 3 - Intron 3 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
CDH15 | NM_004933.2 | NP_004924.1 | ||
AK308596.1 | ||||
AK308631.1 | ||||
BC008951.2 | AAH08951.1 | |||
D83542.1 | BAA12012.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv509638 | Chr.16:89152681 - 89296203 on Build GRCh38 | Insertion | LOC400558 ANKRD11 CDH15 LINC00304 SLC22A31 LOC105371414 ACSF3 ZNF778 |
nsv952072 | Chr.16:89032193 - 89201992 on Build GRCh38 | Deletion | LOC400558 CDH15 LINC00304 SLC22A31 ACSF3 |
nsv573727 | Chr.16:89169527 - 89193067 on Build GRCh38 | Loss | CDH15 |
nsv1063024 | Chr.16:88707330 - 89238482 on Build GRCh38 | Gain | LOC400558 LOC100289580 SLC22A31 GALNS APRT LOC105371409 LOC101927793 TRAPPC2L PABPN1L ZNF778 LOC339059 CDH15 LINC00304 CBFA2T3 LOC107987238 LOC100129697 MIR4722 PIEZO1 CTU2 ACSF3 CDT1 |
nsv471115 | Chr.16:88801844 - 89197442 on Build GRCh38 | Loss | LOC400558 SLC22A31 GALNS APRT LOC105371409 LOC101927793 TRAPPC2L PABPN1L CDH15 LINC00304 CBFA2T3 LOC107987238 LOC100129697 ACSF3 CDT1 |
nsv573720 | Chr.16:88968841 - 89184474 on Build GRCh38 | Gain | LOC400558 CDH15 LINC00304 CBFA2T3 ACSF3 |
nsv573724 | Chr.16:89100686 - 89217401 on Build GRCh38 | Loss | LOC400558 CDH15 LINC00304 SLC22A31 ACSF3 ZNF778 |
nsv573674 | Chr.16:88738775 - 89325907 on Build GRCh38 | Gain | LOC400558 ANKRD11 LOC100287036 LOC100289580 SLC22A31 GALNS APRT LOC105371409 LOC101927793 TRAPPC2L PABPN1L LOC105371414 ZNF778 LOC339059 CDH15 LINC00304 CBFA2T3 LOC107987238 LOC100129697 PIEZO1 ACSF3 CDT1 |
dgv3066n100 | Chr.16:89067685 - 89301626 on Build GRCh38 | Gain | LOC400558 ANKRD11 CDH15 LINC00304 SLC22A31 LOC105371414 ACSF3 ZNF778 |
nsv482951 | Chr.16:88633593 - 90228345 on Build GRCh38 | Loss | GALNS APRT LOC105371409 SNAI3 LOC339059 CDH15 DPEP1 SPATA33 DEF8 IL17C AFG3L1P ACSF3 SNORD68 LOC400558 TUBB8P7 SLC22A31 VPS9D1 CHMP1A SNAI3-AS1 SPATA2L GAS8-AS1 TRAPPC2L CBFA2T3 LOC101927817 MC1R LOC100129697 CTU2 FANCA CYBA CDK10 GAS8 ANKRD11 LOC100289580 URAHP DBNDD1 SPIRE2 PRDM7 RNF166 VPS9D1-AS1 PABPN1L SPG7 LOC105371414 ZNF778 LOC107987238 MVD PIEZO1 CDT1 LOC100287036 FAM157C CENPBD1 LOC101927793 TUBB3 LOC105371419 LINC00304 TCF25 LOC107984817 CPNE7 MIR4722 ZNF276 RPL13 |
esv2763149 | Chr.16:89179547 - 89368114 on Build GRCh38 | Gain | ANKRD11 CDH15 LOC100287036 SLC22A31 LOC105371414 ZNF778 |
dgv5320n54 | Chr.16:89114475 - 89197443 on Build GRCh38 | Loss | LOC400558 CDH15 LINC00304 SLC22A31 ACSF3 |
More Information
Set Membership: |
Intragenic Non-exonic DGV Variation |