Assay Details
Target Gene Details
Entrez Gene ID: | 339501 |
Gene Name: | protease, serine 38 |
Gene Aliases: |
MPN2 |
Location: |
Chr.1:227815708-227846470 on Build GRCh38 |
Assay Gene Location: | Within Exon 3 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
PRSS38 | NM_183062.2 | 3 | 496 | NP_898885.1 |
XM_011544175.2 | 3 | 505 | XP_011542477.1 | |
XM_011544176.2 | 3 | 505 | XP_011542478.1 | |
BC130400.1 | 3 | 568 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv549273 | Chr.1:227808265 - 227863533 on Build GRCh38 | Loss | PRSS38 |
nsv826908 | Chr.1:227707685 - 228503399 on Build GRCh38 | Gain | HIST3H2BB TRIM17 MIR5008 IBA57 JMJD4 HIST3H2A LOC100506571 C1orf35 RNF187 OBSCN MRPL55 HIST3H3 LOC107985355 PRSS38 LOC101060022 GJC2 IBA57-AS1 WNT3A SNAP47 MIR6742 MIR3620 TRIM11 LOC101927401 ARF1 MIR4666A C1orf145 GUK1 LOC105373289 WNT9A |
esv32853 | Chr.1:227692415 - 228670462 on Build GRCh38 | Gain | RNA5S11 MIR5008 RNA5S13 HIST3H2A C1orf35 RNA5S12 RNF187 HIST3H3 LOC107985355 LOC105373132 DUSP5P1 GJC2 IBA57-AS1 RNA5S7 WNT3A MIR6742 MIR3620 RNA5S5 RNA5S9 RHOU RNA5S15 LOC105373289 RNA5S3 RNA5S1 WNT9A HIST3H2BB TRIM17 IBA57 JMJD4 LOC100506571 OBSCN MRPL55 PRSS38 LOC101060022 RNA5S16 RNA5S17 SNAP47 RNA5S4 RNA5S14 TRIM11 RNA5S2 BTNL10 LOC101927401 ARF1 RNA5S8 MIR4666A C1orf145 GUK1 RNA5S10 RNA5S6 |
nsv998933 | Chr.1:227805227 - 227871595 on Build GRCh38 | Loss | PRSS38 |
nsv549272 | Chr.1:227748061 - 227858047 on Build GRCh38 | Loss | SNAP47 PRSS38 LOC105373289 |
More Information
Additional Information:
For this assay, SNP(s) [rs74588116] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Exonic DGV Variation |