Assay Details
Target Gene Details
Entrez Gene ID: | 79888 |
Gene Name: | lysophosphatidylcholine acyltransferase 1 |
Gene Aliases: |
AGPAT10, AGPAT9, AYTL2, PFAAP3, lpcat |
Location: |
Chr.5:1461427-1523961 on Build GRCh38 |
Assay Gene Location: | Within Exon 18 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
LPCAT1 | NM_024830.3 | 14 | 2569 | NP_079106.3 |
XM_005248373.3 | 15 | 2477 | XP_005248430.1 | |
XM_011514132.1 | 14 | 2578 | XP_011512434.1 | |
XM_011514134.1 | 14 | 2344 | XP_011512436.1 | |
XM_017009879.1 | 8 | 1880 | XP_016865368.1 | |
AF052162.1 | 1 | 242 | ||
AK022499.1 | 9 | 1748 | BAB14061.1 | |
AK022505.1 | 9 | 1748 | BAB14065.1 | |
AK090444.1 | 12 | 2048 | BAC03425.1 | |
AK095552.1 | 3 | 1319 | ||
AK123603.1 | 1 | 2681 | ||
AL831864.1 | 2 | 1111 | CAD38556.1 | |
BC020166.1 | 12 | 2035 | AAH20166.3 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv461910 | Chr.5:1423790 - 1468172 on Build GRCh38 | Loss | LPCAT1 SLC6A3 |
nsv830187 | Chr.5:1317991 - 1509711 on Build GRCh38 | Loss | CLPTM1L LPCAT1 SLC6A3 LINC01511 |
nsv596629 | Chr.5:457146 - 1468172 on Build GRCh38 | Gain | CEP72 MIR4456 ZDHHC11B NKD2 ZDHHC11 LOC100996325 CLPTM1L PP7080 SLC6A3 LOC101929895 SLC12A7 CTD-3080P12.3 LOC100288152 TERT SLC6A19 EXOC3 LOC100506688 TPPP MIR4635 SLC6A18 SLC9A3 TRIP13 LPCAT1 MIR4457 LINC01511 BRD9 |
dgv9536n54 | Chr.5:1411297 - 1468172 on Build GRCh38 | Loss | LPCAT1 SLC6A3 |
More Information
Set Membership: |
Intragenic Exonic DGV Variation |