Assay Details
Target Gene Details
Entrez Gene ID: | 6360 |
Gene Name: | C-C motif chemokine ligand 16 |
Gene Aliases: |
CKb12, HCC-4, ILINCK, LCC-1, LEC, LMC, Mtn-1, NCC-4, NCC4, SCYA16, SCYL4 |
Location: |
Chr.17:35976493-35983620 on Build GRCh38 |
Assay Gene Location: | Within Exon 5 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
CCL16 | NM_004590.3 | 3 | 365 | NP_004581.1 |
XM_005258020.4 | 5 | 647 | XP_005258077.1 | |
AB007454.1 | 3 | 365 | BAA24057.1 | |
AF039955.1 | 3 | 356 | AAC97451.1 | |
AF055467.1 | 3 | 323 | AAC28844.1 | |
BC099662.3 | 3 | 330 | AAH99662.1 | |
BQ722834.1 | 2 | 242 | ||
U91746.1 | 3 | 289 | AAC05587.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv1059795 | Chr.17:35828724 - 36157706 on Build GRCh38 | Gain | CCL5 CCL15 LRRC37A8P RDM1 LYZL6 CCL16 CCL14 TAF15 CCL15-CCL14 CCL3 CCL18 LOC101927339 CCL23 HEATR9 CCL4 |
nsv833427 | Chr.17:35958281 - 36115227 on Build GRCh38 | Loss | CCL16 CCL14 CCL15-CCL14 CCL3 CCL18 LOC101927339 CCL23 CCL15 CCL4 |
nsv833424 | Chr.17:35911883 - 36092128 on Build GRCh38 | Gain | LYZL6 CCL16 CCL14 CCL15-CCL14 CCL3 CCL18 LOC101927339 CCL23 CCL15 RDM1 |
More Information
Additional Information:
For this assay, SNP(s) [rs74842203] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Exonic DGV Variation |