Assay Details
Target Gene Details
Entrez Gene ID: | 59307 |
Gene Name: | single Ig and TIR domain containing |
Gene Aliases: |
IL-1R8, TIR8 |
Location: |
Chr.11:405716-417454 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 8 - Exon 9 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SIGIRR | NM_001135053.1 | NP_001128525.1 | ||
NM_001135054.1 | NP_001128526.1 | |||
NM_021805.2 | NP_068577.2 | |||
XM_005253044.2 | XP_005253101.1 | |||
XM_005253045.1 | XP_005253102.1 | |||
XM_005253046.1 | XP_005253103.1 | |||
XM_005253048.4 | XP_005253105.1 | |||
XM_017018099.1 | XP_016873588.1 | |||
XM_017018100.1 | XP_016873589.1 | |||
AK025099.1 | BAB15066.1 | |||
AK093427.1 | 6 | 916 | ||
AK172830.1 | BAD18795.1 | |||
AY358342.1 | AAQ88708.1 | |||
BC003591.1 | AAH03591.1 | |||
BC025953.1 | AAH25953.1 | |||
BC106007.1 | AAI06008.1 | |||
BX369506.2 | ||||
CR457338.1 | CAG33619.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv527327 | Chr.11:295343 - 620599 on Build GRCh38 | Loss | LOC101059906 IFITM3 ANO9 LOC143666 IRF7 PGGHG B4GALNT4 IFITM1 HRAS RNH1 MIR210 IFITM5 PHRF1 IFITM2 PKP3 RASSF7 LMNTD2 CDHR5 MIR210HG PTDSS2 LRRC56 SIGIRR |
nsv469923 | Chr.11:378188 - 1302334 on Build GRCh38 | Loss | LOC101059906 TALDO1 SCT RPLP2 ANO9 LOC143666 HRAS CHID1 MIR210 POLR2L TOLLIP PNPLA2 PDDC1 CD151 PIDD1 PTDSS2 SLC25A22 TSPAN4 MUC5B SNORA52 IRF7 B4GALNT4 PANO1 TMEM80 RNH1 PHRF1 MIR6744 CEND1 DEAF1 MUC5AC DRD4 LOC171391 PKP3 RASSF7 LMNTD2 MUC6 MUC2 AP2A2 EPS8L2 CDHR5 MIR210HG LRRC56 LOC101927503 SIGIRR CRACR2B |
nsv552776 | Chr.11:366710 - 432436 on Build GRCh38 | Loss | ANO9 PKP3 B4GALNT4 SIGIRR |
nsv951268 | Chr.11:368601 - 503700 on Build GRCh38 | Deletion | ANO9 PKP3 B4GALNT4 RNH1 PTDSS2 SIGIRR |
nsv552770 | Chr.11:356090 - 444628 on Build GRCh38 | Gain | ANO9 PKP3 B4GALNT4 SIGIRR |
dgv1505n54 | Chr.11:198510 - 470331 on Build GRCh38 | Gain | IFITM3 ANO9 BET1L PGGHG B4GALNT4 IFITM1 RIC8A ODF3 IFITM5 IFITM2 PKP3 SIRT3 PSMD13 MIR6743 PTDSS2 NLRP6 SIGIRR |
nsv1159790 | Chr.11:340219 - 491334 on Build GRCh38 | Deletion | ANO9 PKP3 B4GALNT4 PTDSS2 SIGIRR |
dgv182e199 | Chr.11:349830 - 943372 on Build GRCh38 | Deletion | LOC101059906 TALDO1 SCT RPLP2 ANO9 LOC143666 HRAS CHID1 MIR210 POLR2L PNPLA2 PDDC1 CD151 PIDD1 PTDSS2 SLC25A22 TSPAN4 SNORA52 IRF7 B4GALNT4 PANO1 TMEM80 RNH1 PHRF1 CEND1 DEAF1 DRD4 LOC171391 PKP3 RASSF7 LMNTD2 AP2A2 EPS8L2 CDHR5 MIR210HG LRRC56 SIGIRR CRACR2B |
nsv552822 | Chr.11:403545 - 408352 on Build GRCh38 | Loss | PKP3 SIGIRR |
More Information
Additional Information:
For this assay, SNP(s) [rs112731199] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Non-exonic DGV Variation |