Hs01813890_cn

• Gene Symbol: HMG20B
• Assay Reference Genome Location: Chr.19:3579085 on build GRCh38
• Cytoband: 19p13.3

Target Gene Details

• Entrez Gene ID: 10362
• Gene Name: high mobility group 20B
• Gene Aliases: BRAF25, BRAF35, HMGX2, HMGXB2, PP7706, SMARCE1r, SOXL, pp8857
• Location: Chr.19:3572938-3579083 on Build GRCh38
• Assay Gene Location: Overlaps - Exon 10

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
HMG20B	NM_006339.2			NP_006330.2
	XM_017026144.1			XP_016881633.1
	AF072165.1			AAF76253.1
	AF072836.1			AAC26860.1
	AF146223.1			AAF66707.1
	AF318366.1			AAL55873.1
	AK090733.1			BAC03510.1
	AK129638.1
	AK289500.1
	AL355691.1
	AL355702.1
	AL355703.1
	AL355709.1			CAB90809.2
	BC002552.2			AAH02552.1
	BC003505.1			AAH03505.2
	BC004408.1			AAH04408.2
	BC021585.1			AAH21585.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv961165	Chr.19:3567351 - 3579402 on Build GRCh38	Duplication	HMG20B
nsv953948	Chr.19:3171703 - 3700002 on Build GRCh38	Deletion	CELF5 PIP5K1C GIPC3 SMIM24 TBXA2R DOHH C19orf71 MFSD12 NCLN FZR1 CACTIN CACTIN-AS1 HMG20B NFIC S1PR4
nsv833713	Chr.19:3564423 - 3627361 on Build GRCh38	Loss	GIPC3 CACTIN CACTIN-AS1 HMG20B TBXA2R
nsv470114	Chr.19:3372516 - 3855979 on Build GRCh38	Loss	PIP5K1C GIPC3 MRPL54 ZFR2 APBA3 SMIM24 TBXA2R RAX2 MATK DOHH C19orf71 MFSD12 FZR1 CACTIN CACTIN-AS1 HMG20B TJP3 NFIC

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

transcription, DNA-templated
regulation of transcription, DNA-templated
cell cycle
blood coagulation
histone deacetylation
negative regulation of protein sumoylation
skeletal muscle cell differentiation
positive regulation of neuron differentiation

Function(s)

DNA binding
histone deacetylase activity
protein binding
protein heterodimerization activity