Assay Details
Target Gene Details
Entrez Gene ID: | 60343 |
Gene Name: | family with sequence similarity 3 member A |
Gene Aliases: |
2.19, DLD, DXS560S, XAP-7 |
Location: |
Chr.X:154506159-154516249 on Build GRCh38 |
Assay Gene Location: | Within Exon 5 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
FAM3A | NM_001171132.2 | 5 | 609 | NP_001164603.1 |
NM_001171133.2 | 4 | 495 | NP_001164604.1 | |
NM_001171134.2 | 4 | 706 | NP_001164605.1 | |
NM_001282311.1 | 5 | 804 | NP_001269240.1 | |
NM_001282312.1 | 5 | 550 | NP_001269241.1 | |
NM_021806.3 | 4 | 706 | NP_068578.2 | |
XM_005274714.3 | 6 | 654 | XP_005274771.1 | |
XM_005274716.3 | 6 | 654 | XP_005274773.1 | |
XM_005277879.4 | 5 | 615 | XP_005277936.1 | |
XM_006724831.2 | 6 | 654 | XP_006724894.1 | |
XM_006724832.3 | 5 | 615 | XP_006724895.1 | |
XM_006724833.2 | 6 | 654 | XP_006724896.1 | |
XM_006724834.2 | 5 | 767 | XP_006724897.1 | |
XM_011531185.2 | 3 | 212 | XP_011529487.1 | |
XM_017029699.1 | 4 | 927 | XP_016885188.1 | |
XM_017029700.1 | 4 | 926 | XP_016885189.1 | |
XM_017029701.1 | 5 | 829 | XP_016885190.1 | |
XM_017029702.1 | 4 | 442 | XP_016885191.1 | |
AK024601.1 | 5 | 566 | ||
AK057945.1 | 5 | 424 | ||
AK124890.1 | 1 | 2900 | ||
AK294116.1 | 4 | 669 | ||
AK314682.1 | 4 | 624 | ||
AL539139.3 | 5 | 801 | ||
BC002934.1 | 5 | 708 | AAH02934.1 | |
BC008912.2 | 4 | 357 | AAH08912.1 | |
BM457676.1 | 5 | 591 | ||
CX867071.1 | 4 | 413 | ||
X87193.1 | 4 | 513 | CAA60645.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
esv33784 | Chr.X:153962665 - 155699588 on Build GRCh38 | Gain+Loss | FAM3A RAB39B BRCC3 H2AFB3 EMD TAZ PLXNA3 FAM223A OPN1MW2 TMLHE-AS1 SLC10A3 CTAG1A IRAK1 F8A2 MIR3202-1 G6PD TMLHE OPN1MW3 F8A1 ATP6AP1 HCFC1 SPRY3 FUNDC2 TMEM187 LOC101927830 SMIM9 VBP1 CH17-340M24.3 SNORA56 DNASE1L1 GDI1 CTAG2 MIR1184-3 MIR3202-2 CMC4 F8A3 F8 MIR1184-2 RPL10 H2AFB2 MIR6858 IKBKG OPN1MW FLNA GAB3 TEX28 H2AFB1 SNORA36A LOC107987332 LOC105373386 TKTL1 MIR1184-1 MIR718 CTAG1B SNORA70 MPP1 LAGE3 MECP2 MIR664B MTCP1 FAM223B OPN1LW CLIC2 UBL4A HCFC1-AS1 DKC1 FAM50A |
nsv519042 | Chr.X:154082978 - 154601444 on Build GRCh38 | Gain | FAM3A MIR6858 IKBKG OPN1MW FLNA TEX28 EMD TAZ PLXNA3 FAM223A OPN1MW2 SLC10A3 CTAG1A G6PD LOC107987332 LOC105373386 TKTL1 OPN1MW3 ATP6AP1 SNORA70 LAGE3 MECP2 OPN1LW CH17-340M24.3 DNASE1L1 UBL4A GDI1 FAM50A RPL10 |
esv33199 | Chr.X:153065734 - 154591978 on Build GRCh38 | Gain+Loss | FAM3A EMD TAZ LCA10 PLXNA3 FAM223A OPN1MW2 PNCK SLC10A3 CTAG1A IRAK1 MIR3202-1 G6PD PNMA6A OPN1MW3 LOC105373383 PDZD4 RENBP IDH3G ATP6AP1 PLXNB3 ATP2B3 HCFC1 SRPK3 TMEM187 SSR4 BGN CH17-340M24.3 DNASE1L1 BCAP31 LOC107983954 GDI1 MIR3202-2 DUSP9 RPL10 LOC105373378 MIR6858 IKBKG OPN1MW FLNA TEX28 LOC105373377 ZNF275 L1CAM ABCD1 LOC107987332 LOC105373386 NAA10 TKTL1 MIR718 ARHGAP4 SNORA70 LAGE3 AVPR2 LOC105373381 MECP2 SLC6A8 OPN1LW MAGEA1 FAM58A TREX2 HAUS7 UBL4A HCFC1-AS1 ZFP92 FAM50A |
nsv508816 | Chr.X:154492171 - 154591783 on Build GRCh38 | Insertion | FAM3A IKBKG FAM223A CTAG1A G6PD |
More Information
Set Membership: |
Intragenic Exonic DGV Variation |