Assay Details
Target Gene Details
Entrez Gene ID: | 254531 |
Gene Name: | lysophosphatidylcholine acyltransferase 4 |
Gene Aliases: |
AGPAT7, AYTL3, LPAAT-eta, LPEAT2 |
Location: |
Chr.15:34358888-34367196 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 8 - Intron 9 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
LPCAT4 | NM_153613.2 | NP_705841.2 | ||
XM_006720454.2 | XP_006720517.1 | |||
XM_011521422.1 | XP_011519724.1 | |||
AF007155.1 | AAC19156.1 | |||
AF529233.1 | AAP97722.1 | |||
AF542964.1 | AAN33178.1 | |||
AK290273.1 | ||||
AL832237.1 | ||||
AY734233.1 | AAU34184.1 | |||
BC024892.2 | AAH24892.2 | |||
BC092463.1 | AAH92463.1 | |||
BC144236.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv517751 | Chr.15:34355367 - 34579095 on Build GRCh38 | Gain+Loss | MIR1233-2 GOLGA8B LPCAT4 GOLGA8A NUTM1 MIR1233-1 |
nsv471236 | Chr.15:34360482 - 34508393 on Build GRCh38 | Loss | LPCAT4 GOLGA8A MIR1233-1 |
nsv471682 | Chr.15:34268250 - 34590429 on Build GRCh38 | Gain+Loss | MIR1233-2 NOP10 GOLGA8B SLC12A6 LPCAT4 GOLGA8A NUTM1 MIR1233-1 |
nsv1052620 | Chr.15:32612402 - 34538731 on Build GRCh38 | Gain | LOC105370757 PGBD4 GREM1 GOLGA8B RYR3 SLC12A6 AVEN CHRM5 ARHGAP11A KATNBL1 SCG5 EMC7 NUTM1 MIR1233-1 MIR1233-2 NOP10 LPCAT4 TMCO5B FMN1 GOLGA8A LOC101928042 LOC101928134 EMC4 LOC100131315 |
esv33337 | Chr.15:31689863 - 34575097 on Build GRCh38 | Gain+Loss | PGBD4 GOLGA8N GOLGA8B ULK4P1 GOLGA8K CHRM5 ARHGAP11A LOC105370940 KATNBL1 SCG5 WHAMMP1 EMC7 CHRNA7 GOLGA8A LOC101928042 EMC4 LOC101060588 LOC105370757 GREM1 RYR3 SLC12A6 AVEN LOC100996255 GOLGA8O NUTM1 MIR1233-1 MIR1233-2 NOP10 LOC100653133 LPCAT4 TMCO5B FMN1 LOC101928134 LOC100131315 |
nsv509567 | Chr.15:34345031 - 34396055 on Build GRCh38 | Insertion | LPCAT4 GOLGA8A NUTM1 MIR1233-1 |
nsv1485 | Chr.15:34354006 - 34601539 on Build GRCh38 | Deletion | MIR1233-2 GOLGA8B LPCAT4 GOLGA8A NUTM1 MIR1233-1 |
esv2760024 | Chr.15:34250820 - 34696046 on Build GRCh38 | Gain+Loss | MIR1233-2 NOP10 GOLGA8B SLC12A6 LPCAT4 GOLGA8A NUTM1 MIR1233-1 |
esv3569431 | Chr.15:33564570 - 35080307 on Build GRCh38 | Gain | PGBD4 GOLGA8B RYR3 SLC12A6 AVEN ZNF770 CHRM5 KATNBL1 EMC7 NUTM1 AQR MIR1233-1 MIR1233-2 LOC101928174 NOP10 GJD2 LPCAT4 GOLGA8A EMC4 ACTC1 |
nsv469547 | Chr.15:34302356 - 34465606 on Build GRCh38 | Loss | NOP10 SLC12A6 LPCAT4 GOLGA8A NUTM1 MIR1233-1 |
dgv4456n54 | Chr.15:32604149 - 34557061 on Build GRCh38 | Gain | PGBD4 GOLGA8N GOLGA8B CHRM5 ARHGAP11A KATNBL1 SCG5 EMC7 GOLGA8A LOC101928042 EMC4 LOC105370757 GREM1 RYR3 SLC12A6 AVEN NUTM1 MIR1233-1 MIR1233-2 NOP10 LPCAT4 TMCO5B FMN1 LOC101928134 LOC100131315 |
More Information
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |