Assay Details
Target Gene Details
Entrez Gene ID: | 121260 |
Gene Name: | solute carrier family 15 member 4 |
Gene Aliases: |
FP12591, PHT1, PTR4 |
Location: |
Chr.12:128793194-128823996 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 8 - Exon 9 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SLC15A4 | NM_145648.3 | NP_663623.1 | ||
XM_011537895.1 | XP_011536197.1 | |||
AF461893.1 | AAQ04807.1 | |||
AK095717.1 | ||||
AK097154.1 | 1 | 913 | ||
AY038999.1 | AAK72099.1 | |||
AY050629.1 | AAK95565.1 | |||
BC028394.2 | AAH28394.2 | |||
BC146803.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
dgv1576n100 | Chr.12:128763841 - 128795043 on Build GRCh38 | Gain | SLC15A4 |
nsv1051433 | Chr.12:128679360 - 128888555 on Build GRCh38 | Gain | TMEM132C LOC101929984 LOC100128276 SLC15A4 GLT1D1 |
esv3631151 | Chr.12:128793327 - 128853915 on Build GRCh38 | Gain | LOC101929984 LOC100128276 SLC15A4 GLT1D1 |
esv2759920 | Chr.12:128587760 - 128896765 on Build GRCh38 | Loss | TMEM132C LOC101929984 LOC100128276 SLC15A4 GLT1D1 |
nsv1040831 | Chr.12:128749443 - 129516029 on Build GRCh38 | Gain | TMEM132D LOC101927735 LOC101929984 LOC100128276 SLC15A4 GLT1D1 LOC283352 |
nsv560650 | Chr.12:128744185 - 128799166 on Build GRCh38 | Gain | SLC15A4 |
dgv527e212 | Chr.12:128794319 - 128806710 on Build GRCh38 | Loss | SLC15A4 |
nsv832549 | Chr.12:128739165 - 128936554 on Build GRCh38 | Loss | LOC101929984 LOC100128276 SLC15A4 GLT1D1 |
esv3581993 | Chr.12:128679608 - 128885566 on Build GRCh38 | Gain | TMEM132C LOC101929984 LOC100128276 SLC15A4 GLT1D1 |
More Information
Additional Information:
For this assay, SNP(s) [rs147786891] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Non-exonic DGV Variation |