Assay Details
Target Gene Details
Entrez Gene ID: | 254531 |
Gene Name: | lysophosphatidylcholine acyltransferase 4 |
Gene Aliases: |
AGPAT7, AYTL3, LPAAT-eta, LPEAT2 |
Location: |
Chr.15:34358888-34367196 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 2 - Exon 2 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
LPCAT4 | NM_153613.2 | NP_705841.2 | ||
XM_006720454.2 | XP_006720517.1 | |||
XM_011521422.1 | XP_011519724.1 | |||
AF529233.1 | AAP97722.1 | |||
AF542964.1 | AAN33178.1 | |||
AK001119.1 | 1 | 351 | ||
AK290273.1 | ||||
AK308910.1 | ||||
AL832237.1 | ||||
AY734233.1 | AAU34184.1 | |||
BC092463.1 | AAH92463.1 | |||
BC144236.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv517751 | Chr.15:34355367 - 34579095 on Build GRCh38 | Gain+Loss | MIR1233-2 GOLGA8B GOLGA8A NUTM1 LPCAT4 MIR1233-1 |
nsv984049 | Chr.15:34365535 - 34408591 on Build GRCh38 | Duplication | GOLGA8A LPCAT4 MIR1233-1 |
nsv471236 | Chr.15:34360482 - 34508393 on Build GRCh38 | Loss | GOLGA8A LPCAT4 MIR1233-1 |
nsv471682 | Chr.15:34268250 - 34590429 on Build GRCh38 | Gain+Loss | MIR1233-2 NOP10 GOLGA8B GOLGA8A SLC12A6 NUTM1 LPCAT4 MIR1233-1 |
nsv1052620 | Chr.15:32612402 - 34538731 on Build GRCh38 | Gain | MIR1233-2 LOC105370757 KATNBL1 RYR3 TMCO5B SLC12A6 EMC4 GREM1 EMC7 NUTM1 LPCAT4 LOC101928042 LOC100131315 NOP10 SCG5 GOLGA8B ARHGAP11A PGBD4 GOLGA8A CHRM5 LOC101928134 MIR1233-1 AVEN FMN1 |
esv33337 | Chr.15:31689863 - 34575097 on Build GRCh38 | Gain+Loss | KATNBL1 RYR3 SLC12A6 GOLGA8N EMC7 NUTM1 LOC101928042 SCG5 ARHGAP11A GOLGA8A CHRM5 MIR1233-1 AVEN MIR1233-2 LOC105370757 LOC100996255 GOLGA8O LOC101060588 TMCO5B EMC4 GREM1 ULK4P1 LPCAT4 LOC100131315 WHAMMP1 NOP10 GOLGA8B LOC105370940 PGBD4 GOLGA8K CHRNA7 LOC101928134 LOC100653133 FMN1 |
nsv509567 | Chr.15:34345031 - 34396055 on Build GRCh38 | Insertion | GOLGA8A NUTM1 LPCAT4 MIR1233-1 |
nsv1485 | Chr.15:34354006 - 34601539 on Build GRCh38 | Deletion | MIR1233-2 GOLGA8B GOLGA8A NUTM1 LPCAT4 MIR1233-1 |
esv2760024 | Chr.15:34250820 - 34696046 on Build GRCh38 | Gain+Loss | MIR1233-2 NOP10 GOLGA8B GOLGA8A SLC12A6 NUTM1 LPCAT4 MIR1233-1 |
esv3569431 | Chr.15:33564570 - 35080307 on Build GRCh38 | Gain | MIR1233-2 ZNF770 KATNBL1 RYR3 SLC12A6 AQR LOC101928174 EMC4 ACTC1 EMC7 NUTM1 LPCAT4 NOP10 GOLGA8B PGBD4 GOLGA8A CHRM5 GJD2 MIR1233-1 AVEN |
nsv469547 | Chr.15:34302356 - 34465606 on Build GRCh38 | Loss | NOP10 GOLGA8A SLC12A6 NUTM1 LPCAT4 MIR1233-1 |
dgv4456n54 | Chr.15:32604149 - 34557061 on Build GRCh38 | Gain | KATNBL1 RYR3 SLC12A6 GOLGA8N EMC7 NUTM1 LOC101928042 SCG5 ARHGAP11A GOLGA8A CHRM5 MIR1233-1 AVEN MIR1233-2 LOC105370757 TMCO5B EMC4 GREM1 LPCAT4 LOC100131315 NOP10 GOLGA8B PGBD4 LOC101928134 FMN1 |
More Information
Set Membership: |
Intragenic Non-exonic DGV Variation |