Assay Details
Target Gene Details
Entrez Gene ID: | 53841 |
Gene Name: | cadherin related family member 5 |
Gene Aliases: |
MLPCDH, MU-PCDH, MUCDHL, MUPCDH |
Location: |
Chr.11:616565-625067 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 2 - Exon 2 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
CDHR5 | NM_001171968.1 | NP_001165439.1 | ||
NM_021924.4 | NP_068743.2 | |||
NM_031264.3 | NP_112554.2 | |||
XM_006718253.3 | XP_006718316.1 | |||
XM_011520188.2 | XP_011518490.1 | |||
XM_011520189.2 | XP_011518491.1 | |||
XM_011520190.2 | XP_011518492.1 | |||
XM_011520191.2 | XP_011518493.1 | |||
AF258675.1 | AAG16732.1 | |||
AF258676.1 | AAG16733.1 | |||
AF258677.1 | ||||
AF258678.1 | ||||
AF258679.1 | ||||
AF276242.1 | AAG30821.1 | |||
AF301909.1 | AAG33495.1 | |||
AK000226.1 | BAA91021.1 | |||
AK000384.1 | BAA91130.1 | |||
AK300991.1 | ||||
AK308040.1 | ||||
AK309157.1 | ||||
AY358368.1 | AAQ88734.1 | |||
BC038405.1 | AAH38405.1 | |||
DA373160.1 | ||||
DQ491193.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv552865 | Chr.11:612843 - 626730 on Build GRCh38 | Loss | IRF7 CDHR5 SCT |
dgv1522n54 | Chr.11:557342 - 656845 on Build GRCh38 | Loss | PHRF1 IRF7 MIR210 MIR210HG CDHR5 DRD4 LMNTD2 LOC143666 DEAF1 SCT RASSF7 |
nsv951270 | Chr.11:528401 - 628100 on Build GRCh38 | Deletion | HRAS PHRF1 IRF7 MIR210 MIR210HG CDHR5 LMNTD2 LOC143666 SCT LOC101059906 LRRC56 RASSF7 |
nsv469923 | Chr.11:378188 - 1302334 on Build GRCh38 | Loss | ANO9 PHRF1 IRF7 CDHR5 RNH1 DRD4 MUC5AC CD151 MUC5B LOC101927503 PDDC1 PNPLA2 PTDSS2 LMNTD2 MUC6 SLC25A22 DEAF1 AP2A2 RASSF7 PIDD1 MUC2 MIR6744 CHID1 CEND1 LRRC56 B4GALNT4 PANO1 HRAS EPS8L2 TSPAN4 MIR210 TOLLIP RPLP2 PKP3 MIR210HG LOC171391 SNORA52 LOC143666 TMEM80 TALDO1 SCT SIGIRR CRACR2B POLR2L LOC101059906 |
nsv552861 | Chr.11:589246 - 662407 on Build GRCh38 | Loss | PHRF1 IRF7 CDHR5 DRD4 DEAF1 SCT |
esv2759794 | Chr.11:409846 - 1336162 on Build GRCh38 | Loss | ANO9 PHRF1 IRF7 CDHR5 RNH1 DRD4 MUC5AC CD151 MUC5B LOC101927503 PDDC1 PNPLA2 PTDSS2 LMNTD2 MUC6 SLC25A22 DEAF1 AP2A2 RASSF7 TOLLIP-AS1 PIDD1 MUC2 MIR6744 CHID1 CEND1 LRRC56 PANO1 HRAS EPS8L2 TSPAN4 MIR210 TOLLIP RPLP2 MIR210HG LOC171391 SNORA52 LOC143666 TMEM80 TALDO1 SCT SIGIRR CRACR2B POLR2L LOC101059906 |
esv2762889 | Chr.11:606294 - 653614 on Build GRCh38 | Loss | PHRF1 IRF7 CDHR5 DRD4 DEAF1 SCT |
nsv1039558 | Chr.11:534242 - 672091 on Build GRCh38 | Gain | PHRF1 IRF7 CDHR5 DRD4 LRRC56 HRAS MIR210 MIR210HG LMNTD2 LOC143666 DEAF1 SCT RASSF7 |
nsv1053964 | Chr.11:491334 - 692433 on Build GRCh38 | Gain | PHRF1 IRF7 CDHR5 RNH1 DRD4 LRRC56 HRAS MIR210 PTDSS2 MIR210HG LMNTD2 LOC143666 DEAF1 SCT LOC101059906 RASSF7 |
dgv182e199 | Chr.11:349830 - 943372 on Build GRCh38 | Deletion | ANO9 PHRF1 IRF7 CDHR5 RNH1 DRD4 CD151 PDDC1 PNPLA2 PTDSS2 LMNTD2 SLC25A22 DEAF1 AP2A2 RASSF7 PIDD1 CHID1 CEND1 LRRC56 B4GALNT4 PANO1 HRAS EPS8L2 TSPAN4 MIR210 RPLP2 PKP3 MIR210HG LOC171391 SNORA52 LOC143666 TMEM80 TALDO1 SCT SIGIRR CRACR2B POLR2L LOC101059906 |
nsv1159791 | Chr.11:461793 - 909492 on Build GRCh38 | Deletion | PHRF1 IRF7 CDHR5 RNH1 DRD4 CD151 PDDC1 PNPLA2 PTDSS2 LMNTD2 SLC25A22 DEAF1 RASSF7 PIDD1 CHID1 CEND1 LRRC56 PANO1 HRAS EPS8L2 TSPAN4 MIR210 RPLP2 MIR210HG LOC171391 SNORA52 LOC143666 TMEM80 TALDO1 SCT CRACR2B POLR2L LOC101059906 |
More Information
Set Membership: |
Intragenic Non-exonic DGV Variation |