Assay Details
Target Gene Details
Entrez Gene ID: | 135644 |
Gene Name: | tripartite motif containing 40 |
Gene Aliases: |
RNF35 |
Location: |
Chr.6:30135998-30148773 on Build GRCh38 |
Assay Gene Location: | Within Exon 2 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
TRIM40 | NM_001286633.1 | 2 | 624 | NP_001273562.1 |
NM_138700.4 | 1 | 542 | NP_619645.1 | |
XM_011514305.1 | 2 | 1055 | XP_011512607.1 | |
XM_011514306.1 | 3 | 921 | XP_011512608.1 | |
XM_011514308.1 | 2 | 1055 | XP_011512610.1 | |
XM_011514309.1 | 2 | 1055 | XP_011512611.1 | |
AF489517.1 | 1 | 265 | AAM09503.1 | |
BC060785.1 | 2 | 624 | AAH60785.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv1074389 | Chr.6:29116522 - 31446623 on Build GRCh38 | Deletion | LINC00243 TRIM26 OR12D3 FLOT1 HLA-L TUBB SFTA2 LOC101929006 HCG4 UBD LINC01015 HLA-H NRM LOC554223 OR5V1 HLA-C MIR4640 OR2J2 C6orf136 HLA-J HCG17 MDC1 MRPS18B MIR877 TRIM39-RPP21 PPP1R10 IFITM4P HCG20 OR14J1 MUC21 HCG22 IER3 TRIM10 HLA-F-AS1 OR2H2 ZNRD1ASP OR2H1 CDSN MOG PPP1R18 HCG8 ZNRD1 HLA-K MDC1-AS1 ATAT1 HCG27 OR11A1 HLA-G MICA TRIM31-AS1 GTF2H4 MIR6891 CCHCR1 HLA-A PPP1R11 GNL1 DDR1 MUC22 HCG18 ABCF1 GABBR1 PRR3 LOC105375014 DPCR1 OR10C1 HCG4B VARS2 HLA-B HCG9 PSORS1C3 TRIM15 DHX16 RPP21 TRIM39 ZFP57 TCF19 HLA-E RNF39 HLA-F TRIM40 PSORS1C1 SNORD32B MAS1L OR12D2 C6orf15 PSORS1C2 POU5F1 TRIM31 |
nsv1122126 | Chr.6:28628023 - 31244023 on Build GRCh38 | Deletion | LINC00243 TRIM26 OR12D3 FLOT1 HLA-L TUBB SFTA2 LOC101929006 HCG4 UBD LINC01015 HLA-H OR2B3 NRM LOC554223 OR5V1 MIR4640 OR2J2 C6orf136 HLA-J HCG17 MDC1 MRPS18B MIR877 TRIM39-RPP21 PPP1R10 IFITM4P HCG20 OR14J1 OR2W1 LINC01623 MUC21 LINC00533 HCG22 IER3 TRIM10 HLA-F-AS1 OR2H2 ZNRD1ASP OR2H1 CDSN MOG ZNF311 OR2J3 PPP1R18 HCG8 ZNRD1 HLA-K MDC1-AS1 ATAT1 HCG27 OR11A1 HLA-G TRIM31-AS1 GTF2H4 CCHCR1 HLA-A PPP1R11 GNL1 DDR1 MUC22 HCG18 ABCF1 GABBR1 PRR3 LOC105375014 DPCR1 OR10C1 HCG4B VARS2 HCG9 PSORS1C3 TRIM15 DHX16 RPP21 TRIM39 ZFP57 TCF19 HLA-E RNF39 HLA-F TRIM40 LINC01556 LOC100129636 PSORS1C1 SNORD32B MAS1L HCG16 OR12D2 HCG14 C6orf15 TRIM27 PSORS1C2 POU5F1 TRIM31 |
nsv1144137 | Chr.6:29720323 - 31338123 on Build GRCh38 | Deletion | LINC00243 TRIM26 FLOT1 HLA-L TUBB SFTA2 HCG4 HLA-H NRM LOC554223 HLA-C MIR4640 C6orf136 HLA-J HCG17 MDC1 MRPS18B MIR877 TRIM39-RPP21 PPP1R10 IFITM4P HCG20 MUC21 HCG22 IER3 TRIM10 HLA-F-AS1 ZNRD1ASP CDSN PPP1R18 HCG8 ZNRD1 HLA-K MDC1-AS1 ATAT1 HCG27 HLA-G TRIM31-AS1 GTF2H4 CCHCR1 HLA-A PPP1R11 GNL1 DDR1 MUC22 HCG18 ABCF1 PRR3 LOC105375014 DPCR1 HCG4B VARS2 HCG9 PSORS1C3 TRIM15 DHX16 RPP21 TRIM39 TCF19 HLA-E RNF39 HLA-F TRIM40 PSORS1C1 C6orf15 PSORS1C2 POU5F1 TRIM31 |
esv2731777 | Chr.6:29943636 - 30260756 on Build GRCh38 | Deletion | TRIM26 HLA-L HCG9 TRIM15 RNF39 TRIM31-AS1 TRIM10 TRIM40 ZNRD1ASP HLA-A HLA-J HCG17 PPP1R11 HCG8 ZNRD1 TRIM31 |
nsv601264 | Chr.6:29883666 - 31320716 on Build GRCh38 | Loss | LINC00243 TRIM26 FLOT1 HLA-L TUBB SFTA2 HLA-H NRM HLA-C MIR4640 C6orf136 HLA-J HCG17 MDC1 MRPS18B MIR877 TRIM39-RPP21 PPP1R10 HCG20 MUC21 HCG22 IER3 TRIM10 ZNRD1ASP CDSN PPP1R18 HCG8 ZNRD1 HLA-K MDC1-AS1 ATAT1 HCG27 TRIM31-AS1 GTF2H4 CCHCR1 HLA-A PPP1R11 GNL1 DDR1 MUC22 HCG18 ABCF1 PRR3 LOC105375014 DPCR1 HCG4B VARS2 HCG9 PSORS1C3 TRIM15 DHX16 RPP21 TRIM39 TCF19 HLA-E RNF39 TRIM40 PSORS1C1 C6orf15 PSORS1C2 POU5F1 TRIM31 |
esv3411275 | Chr.6:29981607 - 31490616 on Build GRCh38 | Duplication | LINC00243 TRIM26 FLOT1 HLA-L TUBB SFTA2 NRM HLA-C MIR4640 C6orf136 HLA-J HCG17 MDC1 MRPS18B MIR877 TRIM39-RPP21 PPP1R10 HCG20 MUC21 HCG22 IER3 TRIM10 ZNRD1ASP CDSN PPP1R18 HCG8 ZNRD1 MDC1-AS1 ATAT1 HCG27 MICA TRIM31-AS1 GTF2H4 MIR6891 HCG26 CCHCR1 HCP5 PPP1R11 GNL1 DDR1 MUC22 HCG18 ABCF1 PRR3 LOC105375014 DPCR1 VARS2 HLA-B PSORS1C3 LOC102725068 TRIM15 DHX16 RPP21 TRIM39 TCF19 HLA-E RNF39 TRIM40 PSORS1C1 C6orf15 PSORS1C2 POU5F1 TRIM31 |
More Information
Additional Information:
For this assay, SNP(s) [rs76945432] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Exonic DGV Variation |