Hs01652210_cn

• Gene Symbol: TCF25
• Assay Reference Genome Location: Chr.16:89896074 on build GRCh38
• Cytoband: 16q24.3

Target Gene Details

• Entrez Gene ID: 22980
• Gene Name: transcription factor 25
• Gene Aliases: FKSG26, Hulp1, NULP1, PRO2620, hKIAA1049
• Location: Chr.16:89873583-89911384 on Build GRCh38
• Assay Gene Location: Overlaps Exon 11 - Intron 11

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TCF25	NM_014972.2			NP_055787.1
	XM_005256297.2			XP_005256354.1
	XM_005256298.2			XP_005256355.1
	XM_005256299.2			XP_005256356.1
	XM_011522956.2			XP_011521258.1
	XM_011522957.2			XP_011521259.1
	XM_011522958.2			XP_011521260.1
	XM_011522959.2			XP_011521261.1
	XM_011522960.2			XP_011521262.1
	XM_011522961.2			XP_011521263.1
	XM_017023047.1			XP_016878536.1
	XM_017023048.1			XP_016878537.1
	XM_017023049.1			XP_016878538.1
	XM_017023050.1			XP_016878539.1
	XM_017023051.1			XP_016878540.1
	XM_017023052.1			XP_016878541.1
	XM_017023053.1			XP_016878542.1
	XM_017023054.1			XP_016878543.1
	XM_017023055.1			XP_016878544.1
	XM_017023056.1			XP_016878545.1
	XM_017023057.1			XP_016878546.1
	XM_017023058.1			XP_016878547.1
	AB028972.1			BAA83001.1
	AF130092.1			AAG35518.1
	AF322111.1			AAG50276.1
	BC000959.1			AAH00959.1
	BC009349.2			AAH09349.1
	BC011884.2			AAH11884.1
	DQ321703.1			ABC55265.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv573744	Chr.16:89738447 - 89915950 on Build GRCh38	Loss	LOC105371419 FANCA TCF25 ZNF276 SPIRE2 LOC107984817
esv2758671	Chr.16:89804324 - 89901541 on Build GRCh38	Loss	LOC105371419 FANCA TCF25 SPIRE2 LOC107984817
esv2762221	Chr.16:89610380 - 90039318 on Build GRCh38	Gain+Loss	LOC105371419 TUBB3 VPS9D1-AS1 GAS8-AS1 AFG3L1P SPATA2L CDK10 CHMP1A DBNDD1 SPATA33 DEF8 GAS8 FANCA TCF25 DPEP1 CENPBD1 ZNF276 SPIRE2 VPS9D1 MC1R LOC107984817
nsv573810	Chr.16:89857498 - 90037251 on Build GRCh38	Loss	DBNDD1 DEF8 GAS8 TUBB3 TCF25 CENPBD1 SPIRE2 GAS8-AS1 MC1R AFG3L1P
nsv428331	Chr.16:89216635 - 90185980 on Build GRCh38	Gain+Loss	LOC105371419 SPG7 LOC101927817 URAHP VPS9D1-AS1 TUBB8P7 AFG3L1P SPATA2L CDK10 DBNDD1 LOC100287036 SPATA33 DPEP1 SPIRE2 LOC105371414 RPL13 CPNE7 ZNF778 TUBB3 GAS8-AS1 PRDM7 CHMP1A DEF8 GAS8 FANCA TCF25 CENPBD1 ZNF276 SNORD68 FAM157C VPS9D1 MC1R LOC107984817 ANKRD11
nsv573799	Chr.16:89852186 - 90022379 on Build GRCh38	Gain	DBNDD1 LOC105371419 DEF8 GAS8 TUBB3 TCF25 CENPBD1 SPIRE2 MC1R AFG3L1P
nsv1066499	Chr.16:89891957 - 90028891 on Build GRCh38	Loss	DBNDD1 DEF8 GAS8 TUBB3 TCF25 CENPBD1 MC1R AFG3L1P
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	LOC105371419 SPG7 PABPN1L LOC100289580 LINC00304 CDK10 LOC100287036 LOC107987238 DPEP1 SPIRE2 LOC105371414 RPL13 CPNE7 TUBB3 GAS8-AS1 PRDM7 PIEZO1 CYBA CBFA2T3 DEF8 LOC339059 GAS8 TCF25 CENPBD1 ZNF276 SNORD68 MIR4722 SNAI3-AS1 GALNS CDH15 CTU2 LOC101927817 URAHP VPS9D1-AS1 SNAI3 TUBB8P7 SLC22A31 AFG3L1P SPATA2L DBNDD1 SPATA33 ACSF3 MVD APRT LOC100129697 ZNF778 IL17C LOC105371409 LOC101927793 TRAPPC2L CHMP1A CDT1 RNF166 FANCA FAM157C VPS9D1 MC1R LOC107984817 LOC400558 ANKRD11

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
transcription, DNA-templated
heart development

Function(s)

DNA binding
transcription factor activity, sequence-specific DNA binding
protein binding