Assay Details
Target Gene Details
Entrez Gene ID: | 100289580 |
Gene Name: | uncharacterized LOC100289580 |
Gene Aliases: |
- |
Location: |
Chr.16:88731180-88741425 on Build GRCh38 |
Assay Gene Location: | Within Exon 3 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
LOC100289580 | NR_103774.1 | 3 | 967 | |
AK127064.1 | 2 | 1719 | ||
AK294743.1 | 3 | 967 |
Target Gene Details
Entrez Gene ID: | 9780 |
Gene Name: | piezo type mechanosensitive ion channel component 1 |
Gene Aliases: |
DHS, FAM38A, LMPH3, Mib |
Location: |
Chr.16:88715338-88785220 on Build GRCh38 |
Assay Gene Location: | Within Exon 6 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
PIEZO1 | NM_001142864.3 | 6 | 842 | NP_001136336.2 |
DR731297.1 | ||||
DV080349.1 | ||||
DV080374.1 | 3 | 342 | ||
KC602455.1 | 6 | 586 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv1063024 | Chr.16:88707330 - 89238482 on Build GRCh38 | Gain | PABPN1L GALNS LOC100129697 ZNF778 LOC107987238 SLC22A31 LOC105371409 MIR4722 LOC339059 LINC00304 CDH15 CBFA2T3 ACSF3 TRAPPC2L LOC100289580 CDT1 LOC101927793 CTU2 LOC400558 PIEZO1 APRT |
nsv471114 | Chr.16:88688461 - 88756339 on Build GRCh38 | Gain | LOC100289580 MIR4722 RNF166 CTU2 LOC339059 PIEZO1 |
nsv471113 | Chr.16:88650665 - 88764428 on Build GRCh38 | Loss | MVD LOC100289580 MIR4722 RNF166 CTU2 LOC339059 SNAI3 SNAI3-AS1 PIEZO1 CYBA |
dgv3064n100 | Chr.16:88683753 - 88846491 on Build GRCh38 | Gain | GALNS LOC107987238 LOC100289580 CDT1 MIR4722 RNF166 CTU2 LOC339059 SNAI3 SNAI3-AS1 PIEZO1 APRT |
nsv517643 | Chr.16:88713767 - 88756339 on Build GRCh38 | Loss | LOC100289580 MIR4722 CTU2 LOC339059 PIEZO1 |
nsv833327 | Chr.16:88667431 - 88757621 on Build GRCh38 | Loss | LOC100289580 MIR4722 RNF166 CTU2 LOC339059 SNAI3 SNAI3-AS1 PIEZO1 |
nsv952070 | Chr.16:88257295 - 88780192 on Build GRCh38 | Deletion | ZNF469 LOC107984862 MVD MIR4722 RNF166 LOC339059 SNAI3 MIR5189 LOC100289580 ZFPM1 ZC3H18-AS1 CTU2 IL17C SNAI3-AS1 ZC3H18 PIEZO1 CYBA |
nsv1927 | Chr.16:88712585 - 88743583 on Build GRCh38 | Insertion | LOC100289580 MIR4722 CTU2 LOC339059 PIEZO1 |
nsv1160442 | Chr.16:88708161 - 88778524 on Build GRCh38 | Deletion | LOC100289580 MIR4722 CTU2 LOC339059 PIEZO1 |
nsv482951 | Chr.16:88633593 - 90228345 on Build GRCh38 | Loss | MVD LOC105371414 SPATA33 GALNS ZNF778 LOC107987238 LOC105371409 SPIRE2 LOC339059 LOC101927817 CDH15 ACSF3 ANKRD11 SPATA2L URAHP LOC100289580 TUBB8P7 LOC101927793 VPS9D1-AS1 SNAI3-AS1 PIEZO1 CENPBD1 APRT PABPN1L LOC100129697 TUBB3 AFG3L1P SNAI3 DPEP1 SPG7 LINC00304 ZNF276 FAM157C CDK10 CDT1 FANCA CTU2 IL17C CYBA LOC107984817 RPL13 LOC100287036 DBNDD1 MIR4722 RNF166 GAS8-AS1 GAS8 SNORD68 DEF8 MC1R VPS9D1 LOC105371419 SLC22A31 TCF25 CPNE7 CHMP1A CBFA2T3 TRAPPC2L PRDM7 LOC400558 |
dgv3065n100 | Chr.16:88711587 - 88927172 on Build GRCh38 | Gain | PABPN1L GALNS LOC107987238 MIR4722 LOC339059 CBFA2T3 TRAPPC2L LOC100289580 CDT1 LOC101927793 CTU2 PIEZO1 APRT |
More Information
Additional Information:
For this assay, SNP(s) [rs115481622] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Exonic DGV Variation |