Assay Details
Target Gene Details
Entrez Gene ID: | 83903 |
Gene Name: | germ cell associated 2, haspin |
Gene Aliases: |
HASPIN |
Location: |
Chr.17:3723903-3726699 on Build GRCh38 |
Assay Gene Location: | Within Exon 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
GSG2 | NM_031965.2 | 1 | 1731 | NP_114171.2 |
AB039834.3 | 1 | 1728 | ||
AF289865.1 | 1 | 1727 | AAK30300.1 | |
AK056691.1 | BAB71255.1 | |||
AK292715.1 | 1 | 1717 | ||
AK310546.1 | 1 | 1731 | ||
AK315247.1 | 1 | 1731 | ||
BC016626.1 | 1 | 1717 | ||
BC047457.1 | 1 | 1712 | AAH47457.1 |
Target Gene Details
Entrez Gene ID: | 3682 |
Gene Name: | integrin subunit alpha E |
Gene Aliases: |
CD103, HUMINAE |
Location: |
Chr.17:3714625-3803766 on Build GRCh38 |
Assay Gene Location: | Within Intron 27 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
ITGAE | NM_002208.4 | NP_002199.3 | ||
XM_011523823.2 | XP_011522125.1 | |||
XM_011523825.2 | XP_011522127.1 | |||
XM_011523827.2 | XP_011522129.1 | |||
XM_011523828.2 | XP_011522130.1 | |||
XM_017024586.1 | XP_016880075.1 | |||
BC113436.1 | ||||
BC117207.1 | ||||
L25851.2 | AAB59359.2 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv574237 | Chr.17:3486822 - 3729542 on Build GRCh38 | Loss | SPATA22 ITGAE TAX1BP3 TRPV1 CTNS ASPA P2RX5-TAX1BP3 EMC6 SHPK TRPV3 GSG2 P2RX5 |
nsv1065489 | Chr.17:2631416 - 3948349 on Build GRCh38 | Gain | SPATA22 TAX1BP3 PAFAH1B1 ATP2A3 EMC6 SHPK CAMKK1 NCBP3 GSG2 P2RX5 P2RX1 MIR1253 MIR6776 CCDC92B OR3A1 OR1D4 TRPV3 OR3A3 OR1D2 OR1E2 ASPA OR1D5 OR3A4P OR1A2 LOC101927911 RAP1GAP2 ITGAE CLUH TRPV1 CTNS P2RX5-TAX1BP3 OR1G1 OR1E1 OR3A2 LOC105371592 OR1A1 LOC105371591 |
nsv469791 | Chr.17:3700760 - 3885899 on Build GRCh38 | Loss | ITGAE CAMKK1 NCBP3 GSG2 |
nsv1055740 | Chr.17:3381841 - 3890153 on Build GRCh38 | Gain | SPATA22 OR1E2 TAX1BP3 ASPA EMC6 SHPK CAMKK1 NCBP3 GSG2 P2RX5 ITGAE TRPV1 CTNS P2RX5-TAX1BP3 OR1E1 OR3A2 TRPV3 OR3A3 |
nsv833342 | Chr.17:3626188 - 3806082 on Build GRCh38 | Loss | ITGAE TAX1BP3 CTNS P2RX5-TAX1BP3 EMC6 SHPK GSG2 P2RX5 |
More Information
Set Membership: |
Intragenic Exonic Intronic Non-exonic DGV Variation |