Assay Details
Target Gene Details
Entrez Gene ID: | 6506 |
Gene Name: | solute carrier family 1 member 2 |
Gene Aliases: |
EAAT2, GLT-1, HBGT |
Location: |
Chr.11:35251205-35420063 on Build GRCh38 |
Assay Gene Location: | Within Exon 16 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SLC1A2 | NM_001195728.2 | 12 | 6197 | NP_001182657.1 |
NM_001252652.1 | 12 | 6262 | NP_001239581.1 | |
NM_004171.3 | 11 | 6559 | NP_004162.2 | |
XM_005253067.1 | 11 | 6036 | XP_005253124.1 | |
XM_011520285.2 | 11 | 6073 | XP_011518587.1 | |
XM_017018136.1 | 11 | 6856 | XP_016873625.1 | |
XM_017018137.1 | 11 | 6076 | XP_016873626.1 | |
XM_017018138.1 | 11 | 6060 | XP_016873627.1 | |
XM_017018139.1 | 10 | 6101 | XP_016873628.1 | |
AK090810.1 | ||||
AY066021.1 | 11 | 6250 | AAL57716.1 | |
BC132768.1 | 11 | 6126 | ||
BX538155.1 | 1 | 2069 | ||
BX648750.1 | 1 | 1921 | ||
CR626999.1 | 1 | 705 | ||
CR627009.1 | 1 | 552 | ||
CR627022.1 | 1 | 2571 | ||
CR749842.1 | 1 | 1880 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv832120 | Chr.11:35255863 - 35468756 on Build GRCh38 | Gain | PAMR1 SLC1A2 |
nsv7733 | Chr.11:35243420 - 35276063 on Build GRCh38 | Insertion | SLC1A2 |
nsv1042014 | Chr.11:34919190 - 37195907 on Build GRCh38 | Loss | PAMR1 RAG1 MIR1343 LOC100507144 LDLRAD3 PDHX TRIM44 PRR5L LOC101928510 C11orf74 FJX1 RAG2 CD44 SLC1A2 COMMD9 MIR3973 TRAF6 |
More Information
Additional Information:
For this assay, SNP(s) [rs57775714] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Exonic DGV Variation |