Hs01550530_cn

• Gene Symbol: CHD6
• Assay Reference Genome Location: Chr.20:41405206 on build GRCh38
• Cytoband: 20q12

Target Gene Details

• Entrez Gene ID: 84181
• Gene Name: chromodomain helicase DNA binding protein 6
• Gene Aliases: CHD-6, CHD5, RIGB
• Location: Chr.20:41402101-41618494 on Build GRCh38
• Assay Gene Location: Within Exon 43

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CHD6	NM_032221.4	37	7713	NP_115597.3
	XM_005260573.2	36	7535	XP_005260630.1
	XM_005260576.4	14	3847	XP_005260633.1
	XM_011529080.2	36	7774	XP_011527382.1
	XM_011529082.2	26	5946	XP_011527384.1
	XM_017028099.1	36	9209	XP_016883588.1
	XM_017028100.1	36	7734	XP_016883589.1
	XM_017028101.1	35	9065	XP_016883590.1
	XM_017028103.1	34	7168	XP_016883592.1
	AB037756.2	23	5514	BAA92573.2
	AK098144.1	3	2146
	AY034072.1	37	7713	AAK56405.1
	BC021907.1	1	214	AAH21907.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1064246	Chr.20:40261343 - 42254320 on Build GRCh38	Loss	TOP1 EMILIN3 ZHX3 PLCG1 PLCG1-AS1 MAFB CHD6 LPIN3 MIR6871 LOC100128988 PTPRT
nsv3381	Chr.20:41296686 - 42137056 on Build GRCh38	Deletion	EMILIN3 ZHX3 CHD6 LPIN3 PTPRT
nsv833984	Chr.20:41239403 - 41417792 on Build GRCh38	Loss	EMILIN3 ZHX3 CHD6 LPIN3

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Gene Ontology Categories:

Process(es)

transcription, DNA-templated
covalent chromatin modification
positive regulation of transcription from RNA polymerase II promoter in response to oxidative stress

Function(s)

transcription cofactor binding
DNA binding
ATP binding
ATP-dependent helicase activity
DNA-dependent ATPase activity