Hs01545390_cn

• Gene Symbol: VSTM1
• Assay Reference Genome Location: Chr.19:54040897 on build GRCh38
• Cytoband: 19q13.42

Target Gene Details

• Entrez Gene ID: 284415
• Gene Name: V-set and transmembrane domain containing 1
• Gene Aliases: SIRL-1, SIRL1, UNQ3033
• Location: Chr.19:54040825-54063966 on Build GRCh38
• Assay Gene Location: Within Exon 13

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
VSTM1	NM_001288791.1	9	742	NP_001275720.1
	NM_001288792.1	8	858	NP_001275721.1
	NM_001288793.1	6	591	NP_001275722.1
	NM_198481.3	9	951	NP_940883.2
	NR_110142.1	10	1040
	XM_011526845.1	10	1348	XP_011525147.1
	XM_011526846.1	10	1258	XP_011525148.1
	XM_011526847.1	11	1326	XP_011525149.1
	XM_011526848.1	9	1165	XP_011525150.1
	XM_011526849.1	9	1054	XP_011525151.1
	AI457604.1	1	84
	AY358542.1	9	960	AAQ88906.1
	BC100943.2	8	835	AAI00944.1
	BG189223.1	5	390
	BQ446114.1	1	82
	DQ479397.1
	FJ584316.1
	FJ584317.1
	FJ584318.1
	FJ584319.1
	FJ584320.1
	FJ882051.1
	FN398145.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv510773	Chr.19:54017180 - 54132236 on Build GRCh38	Deletion	VSTM1 NDUFA3 PRPF31 TARM1 TFPT OSCAR
nsv580110	Chr.19:53961144 - 54093354 on Build GRCh38	Gain	MIR935 CACNG8 VSTM1 TARM1 CACNG6
nsv1057516	Chr.19:53986233 - 54046901 on Build GRCh38	Gain	CACNG8 VSTM1 CACNG6
nsv1063127	Chr.19:53926876 - 54068977 on Build GRCh38	Gain	MIR935 CACNG8 VSTM1 CACNG7 CACNG6
esv2718812	Chr.19:53184636 - 54322450 on Build GRCh38	Deletion	NLRP12 MIR516A1 VN1R4 MIR518B CACNG8 VSTM1 MIR520H MIR518A2 MIR516B2 VN1R2 LILRB3 MIR525 LILRB5 MIR1283-1 MIR517B OSCAR BIRC8 CACNG6 MIR521-2 NDUFA3 LENG1 LOC105372457 CACNG7 LILRB2 MIR519A1 MIR518D TARM1 RPS9 MIR520C FAM90A27P MIR524 MIR519D MIR520F MYADM MIR520D LILRA6 MIR371B MIR512-1 MIR518C MIR520E ZNF677 MIR526A1 MIR522 MIR519B MIR515-1 MIR373 TSEN34 MIR4752 MIR1283-2 MIR519A2 ZNF665 MIR935 MIR498 MIR521-1 MIR371A MIR518E MIR372 MIR523 TMC4 LILRA5 LOC284379 MIR526A2 MIR520B MIR516B1 MIR518A1 MIR517A MIR527 MIR515-2 ZNF765 MIR1323 MIR518F ZNF845 TFPT MIR519E CNOT3 ZNF818P PRKCG ZNF525 ZNF813 TPM3P9 MIR512-2 MIR520G ZNF331 MIR520A DPRX MIR517C MBOAT7 PRPF31 MIR519C ZNF761 MIR526B MIR516A2
nsv833877	Chr.19:53951529 - 54117323 on Build GRCh38	Loss	MIR935 CACNG8 VSTM1 NDUFA3 PRPF31 TARM1 TFPT OSCAR CACNG6
nsv820269	Chr.19:54040652 - 54041356 on Build GRCh38	Gain	VSTM1

More Information

Additional Information:

For this assay, SNP(s) [rs200587635,rs369366127] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

immunoglobulin receptor superfamily

Gene Ontology Categories:

Process(es)

immune system process

Function(s)

cytokine activity