Assay Details
Target Gene Details
Entrez Gene ID: | 84231 |
Gene Name: | TNF receptor associated factor 7 |
Gene Aliases: |
RFWD1, RNF119 |
Location: |
Chr.16:2155752-2178129 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 8 - Exon 9 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
TRAF7 | NM_032271.2 | NP_115647.2 | ||
XM_005255627.4 | XP_005255684.1 | |||
XM_011522700.1 | XP_011521002.1 | |||
AK090624.1 | ||||
AL136921.1 | CAB66855.1 | |||
AY569455.1 | AAS68363.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
esv2422427 | Chr.16:10001 - 2723164 on Build GRCh38 | Duplication | LINC00254 BRICD5 TBL3 NOXO1 MCRIP2 RAB40C PRR25 CCNF MSLN LOC105371038 WFIKKN1 SNORA10 UNKL LOC107987233 LOC106660606 LINC00235 MIR6768 HBZ IGFALS CCDC154 TMEM8A ZNF598 TELO2 ARHGDIG SNRNP25 STUB1 RGS11 FAM234A NME4 ATP6V0C BAIAP3 PRSS27 PGP HBA2 MIR3177 NPRL3 TSC2 MIR4717 MIR1225 LOC100134368 LOC652276 HBQ1 DNASE1L2 RHOT2 ERVK13-1 ECI1 RHBDL1 HBA1 RPS2 CLCN7 NDUFB10 FAHD1 UBE2I PDPK1 TRAF7 FAM173A C16orf91 SOX8 NARFL PTX4 SLC9A3R2 HN1L RHBDF1 ABCA17P POLR3K TPSAB1 C1QTNF8 METTL26 IFT140 E4F1 LMF1-AS1 SNORA64 MIR940 WASIR2 MAPK8IP3 AXIN1 LOC105371046 HAGH WDR90 METRN CHTF18 ABCA3 NTHL1 TBC1D24 AMDHD2 PIGQ LOC105371184 DDX11L10 PRSS29P MSRB1 LOC729652 MRPS34 MIR5587 MIR3677 MIR3178 MIR3176 NME3 FLJ42627 NPW MLST8 CEMP1 SYNGR3 TPSD1 SPSB3 NUBP2 CASKIN1 DECR2 LOC105371045 MEIOB LOC105371049 LOC107984876 TPSB2 SNORA78 LOC101929280 RAB26 TMEM204 GNPTG PDIA2 SNORD60 SSTR5 MIR4516 CACNA1H RPL23AP5 GNG13 TPSG1 TSR3 MIR6859-4 RPL3L RAB11FIP3 LOC100287175 SNHG19 NHLRC4 KCTD5 PRR35 CAPN15 NTN3 HAGHL RPUSD1 EME2 MIR6767 CCDC78 MIR662 FBXL16 HS3ST6 JMJD8 WDR24 CRAMP1 LUC7L GFER SSTR5-AS1 MIR3180-5 LMF1 PKD1 RNPS1 RNF151 C16orf59 HBM LOC105371047 MIR6511B1 MPG MRPL28 SNHG9 |
nsv471072 | Chr.16:1971892 - 2317508 on Build GRCh38 | Loss | SNORD60 ECI1 ABCA3 MIR4516 BRICD5 TBL3 NOXO1 NTHL1 TRAF7 SNHG19 SLC9A3R2 MIR3677 LOC106660606 NPW MLST8 SYNGR3 ZNF598 GFER E4F1 MIR3180-5 CASKIN1 PKD1 RNPS1 MIR940 PGP LOC105371049 MIR6511B1 RAB26 TSC2 MIR4717 MIR1225 DNASE1L2 |
dgv4861n54 | Chr.16:2083900 - 2246850 on Build GRCh38 | Loss | SNORD60 ECI1 MIR4516 MLST8 BRICD5 E4F1 TRAF7 SNHG19 MIR3180-5 CASKIN1 PKD1 PGP LOC105371049 MIR6511B1 RAB26 TSC2 MIR1225 DNASE1L2 |
dgv4863n54 | Chr.16:2141733 - 2274302 on Build GRCh38 | Loss | SNORD60 ECI1 MLST8 BRICD5 E4F1 TRAF7 SNHG19 CASKIN1 RNPS1 MIR940 PGP MIR3677 RAB26 LOC106660606 DNASE1L2 |
nsv457349 | Chr.16:2055054 - 2200730 on Build GRCh38 | Loss | TRAF7 SNORD60 MIR4516 SNHG19 MIR3180-5 CASKIN1 PKD1 LOC105371049 MIR6511B1 RAB26 TSC2 MIR1225 |
nsv457351 | Chr.16:2156590 - 2274302 on Build GRCh38 | Loss | TRAF7 ECI1 MLST8 CASKIN1 BRICD5 RNPS1 MIR940 PGP MIR3677 LOC106660606 DNASE1L2 E4F1 |
nsv1052260 | Chr.16:2074546 - 2629655 on Build GRCh38 | Gain | SNORD60 ECI1 ABCA3 MIR4516 BRICD5 CCNF TBC1D24 AMDHD2 PDPK1 TRAF7 SNHG19 LOC729652 NTN3 MIR3677 MIR3178 LOC106660606 MIR6767 MLST8 MIR6768 ABCA17P CEMP1 E4F1 ATP6V0C MIR3180-5 CASKIN1 PKD1 RNPS1 MIR940 PGP LOC105371049 C16orf59 MIR6511B1 RAB26 TSC2 MIR4717 MIR1225 LOC652276 DNASE1L2 |
nsv952902 | Chr.16:2143400 - 2339999 on Build GRCh38 | Deletion | SNORD60 ECI1 ABCA3 MLST8 BRICD5 E4F1 TRAF7 SNHG19 CASKIN1 RNPS1 MIR940 PGP MIR3677 RAB26 MIR4717 LOC106660606 DNASE1L2 |
More Information
Set Membership: |
Intragenic Non-exonic DGV Variation |