Assay Details
Target Gene Details
Entrez Gene ID: | 79680 |
Gene Name: | chromosome 22 open reading frame 29 |
Gene Aliases: |
BOP |
Location: |
Chr.22:19846138-19854848 on Build GRCh38 |
Assay Gene Location: | Within Exon 3 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
C22orf29 | NM_024627.5 | 3 | 5231 | NP_078903.3 |
AK026924.1 | 1 | 1178 | ||
BX640969.1 | 3 | 5200 | CAE45984.1 | |
BX640998.1 | 3 | 5200 | CAE46001.1 |
Target Gene Details
Entrez Gene ID: | 54584 |
Gene Name: | G protein subunit beta 1 like |
Gene Aliases: |
DGCRK3, FKSG1, GY2, WDR14, WDVCF |
Location: |
Chr.22:19788411-19854939 on Build GRCh38 |
Assay Gene Location: | Within Intron 2 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
GNB1L | NM_053004.2 | NP_443730.1 | ||
AB051432.1 | ||||
AF238328.1 | AAG36826.1 | |||
AF301895.1 | AAG53933.1 | |||
AY007378.1 | AAG12162.1 | |||
BC012060.1 | AAH12060.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv834129 | Chr.22:19705617 - 19919068 on Build GRCh38 | Loss | SEPT5-GP1BB TXNRD2 GP1BB C22orf29 TBX1 GNB1L SEPT5 |
nsv953024 | Chr.22:19842078 - 19854877 on Build GRCh38 | Deletion | C22orf29 GNB1L |
esv3893434 | Chr.22:19470889 - 20343372 on Build GRCh38 | Gain | MIR3618 SEPT5-GP1BB MIR185 TXNRD2 LINC00895 MIR1286 ARVCF LINC00896 DGCR8 MIR6816 COMT MIR4761 MIR1306 LOC440792 GP1BB CCDC188 LOC284865 C22orf29 CLDN5 TBX1 RANBP1 TANGO2 LOC101927859 ZDHHC8 CDC45 GNB1L SEPT5 UFD1L TRMT2A RTN4R DGCR6L |
nsv828939 | Chr.22:19696032 - 20324465 on Build GRCh38 | Loss | MIR3618 SEPT5-GP1BB MIR185 TXNRD2 MIR1286 ARVCF LINC00896 DGCR8 MIR6816 COMT MIR4761 MIR1306 LOC440792 GP1BB CCDC188 LOC284865 C22orf29 TBX1 RANBP1 TANGO2 ZDHHC8 GNB1L SEPT5 TRMT2A RTN4R DGCR6L |
nsv828938 | Chr.22:19691069 - 20324465 on Build GRCh38 | Gain | MIR3618 SEPT5-GP1BB MIR185 TXNRD2 MIR1286 ARVCF LINC00896 DGCR8 MIR6816 COMT MIR4761 MIR1306 LOC440792 GP1BB CCDC188 LOC284865 C22orf29 TBX1 RANBP1 TANGO2 ZDHHC8 GNB1L SEPT5 TRMT2A RTN4R DGCR6L |
nsv834130 | Chr.22:19837923 - 19940567 on Build GRCh38 | Loss | TXNRD2 C22orf29 GNB1L |
esv3568260 | Chr.22:19777375 - 19881883 on Build GRCh38 | Loss | TXNRD2 C22orf29 TBX1 GNB1L |
esv3647279 | Chr.22:19719848 - 19878980 on Build GRCh38 | Gain | SEPT5-GP1BB TXNRD2 GP1BB C22orf29 TBX1 GNB1L SEPT5 |
dgv7983n54 | Chr.22:19762002 - 20321870 on Build GRCh38 | Gain | MIR3618 MIR185 TXNRD2 RANBP1 TANGO2 MIR1286 ARVCF LINC00896 ZDHHC8 GNB1L DGCR8 MIR6816 TRMT2A COMT MIR4761 RTN4R MIR1306 LOC440792 CCDC188 LOC284865 C22orf29 TBX1 DGCR6L |
esv3575418 | Chr.22:18161776 - 19963846 on Build GRCh38 | Gain | LOC102725072 SEPT5-GP1BB TXNRD2 PRODH LOC100996432 CLTCL1 PI4KAP1 LINC00895 LOC729461 LOC100996401 FAM230A C22orf39 USP18 HIRA COMT MIR4761 DGCR5 DGCR14 GP1BB C22orf29 DGCR9 CLDN5 TBX1 DGCR6 RIMBP3 GGT3P LOC642643 GSC2 LINC01311 TMEM191B CDC45 GNB1L SEPT5 LOC100996415 UFD1L DGCR10 TSSK2 DGCR2 MRPL40 DGCR11 SLC25A1 |
More Information
Additional Information:
For this assay, SNP(s) [rs75127693] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Exonic Intronic Non-exonic DGV Variation |