Genomic Map
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Target Gene Details
Entrez Gene ID: | 2997 |
Gene Name: | glycogen synthase 1 |
Gene Aliases: |
GSY, GYS |
Location: |
Chr.19:48968125-48993353 on Build GRCh38 |
Assay Gene Location: | Within Exon 16 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| GYS1 | NM_001161587.1 | 15 | 3163 | NP_001155059.1 |
| NM_002103.4 | 16 | 3355 | NP_002094.2 | |
| NR_027763.1 | 15 | 3173 | ||
| BC002617.2 | 16 | 3294 | AAH02617.1 | |
| BC003182.1 | 15 | 3120 | AAH03182.1 | |
| BC007688.2 | 16 | 3281 | AAH07688.1 | |
| J04501.1 | 16 | 3274 | AAA88046.1 | |
| U32573.1 | 16 | 3253 | AAB60385.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv9739 | Chr.19:47901840 - 50143063 on Build GRCh38 | Gain+Loss |
 SNORD32A
FGF21
VRK3
ADM5
LOC105447645
NUP62
ZNF473
GFY
IL4I1
SLC17A7
LMTK3
PPP1R15A
NOSIP
TEAD2
GRWD1
SNAR-C5
NUCB1
CGB8
CGB5
PNKP
BAX
SNAR-C3
CGB1
CPT1C
MIR4751
C19orf68
DHDH
TBC1D17
PIH1D1
TULP2
PTOV1-AS1
PLA2G4C-AS1
C19orf73
CGB7
SNAR-A4
FUT2
SIGLEC16
ATF5
LOC105372430
SNAR-B1
SNAR-A6
SNAR-A7
ZNF114
RPS11
SLC6A16
SNAR-A11
AP2A1
SNAR-C2
SCAF1
FTL
DKKL1
GYS1
MIR4324
SNAR-A14
TRPM4
SNAR-G2
MIR4749
SNORD34
FCGRT
KCNA7
PTOV1
GRIN2D
BSPH1
TMEM143
SNORD33
SNAR-A3
RPL13A
CGB2
SNAR-A13
ELSPBP1
NTF4
SEC1P
SNRNP70
PRRG2
LIG1
PPFIA3
FUT1
MED25
RPL18
TSKS
CABP5
SNAR-A12
IZUMO1
HRC
PRMT1
RCN3
SNAR-D
FAM83E
KDELR1
LOC101928295
SNAR-A5
SNAR-C1
SNORD35B
AKT1S1
LIN7B
BCL2L12
SPHK2
SNORD35A
MIR150
PLEKHA4
MIR6798
MIR6799
LOC100287477
SNAR-A1
PTH2
MAMSTR
SNAR-C4
SNAR-A10
BCAT2
CARD8
HSD17B14
SULT2B1
RUVBL2
RASIP1
PLA2G4C
FUZ
SYNGR4
CYTH2
MIR6800
KCNJ14
MIR5088
PRR12
SNAR-B2
CCDC155
SIGLEC11
DBP
SPACA4
NTN5
ALDH16A1
MIR4750
IRF3
PTOV1-AS2
FLT3LG
SNAR-A8
CGB3
CA11
LOC101059948
NUCB1-AS1
RRAS
SNAR-A2
CARD8-AS1
CCDC114
FLJ26850
EMP3
SNAR-G1
CD37
SNAR-A9
LHB
|
| dgv3618n100 | Chr.19:48948950 - 49021211 on Build GRCh38 | Gain |
GYS1
BAX
RUVBL2
MIR6798
FTL
LOC101059948
LHB
|
| nsv833857 | Chr.19:48914476 - 49146320 on Build GRCh38 | Loss |
PPFIA3
NUCB1
GYS1
CGB8
CGB5
C19orf73
CGB7
SNAR-G2
BAX
LIN7B
CGB3
MIR6798
CGB1
LOC101059948
NUCB1-AS1
KCNA7
CGB2
RUVBL2
SNAR-G1
DHDH
NTF4
FTL
SNRNP70
LHB
|
| nsv953598 | Chr.19:48957644 - 49085143 on Build GRCh38 | Deletion |
GYS1
CGB8
CGB5
CGB7
SNAR-G2
BAX
CGB3
MIR6798
CGB1
LOC101059948
KCNA7
CGB2
RUVBL2
SNAR-G1
NTF4
FTL
SNRNP70
LHB
|
| nsv833856 | Chr.19:48847866 - 48986483 on Build GRCh38 | Loss |
NUCB1
GYS1
BAX
DHDH
PPP1R15A
PLEKHA4
TULP2
FTL
NUCB1-AS1
|
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Additional Information:
For this assay, SNP(s) [rs117997270] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic
Exonic
DGV Variation
|
Gene Ontology Categories:
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