Assay Details
Target Gene Details
Entrez Gene ID: | 84231 |
Gene Name: | TNF receptor associated factor 7 |
Gene Aliases: |
RFWD1, RNF119 |
Location: |
Chr.16:2155752-2178129 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 3 - Exon 4 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
TRAF7 | NM_032271.2 | NP_115647.2 | ||
XM_005255627.4 | XP_005255684.1 | |||
XM_011522700.1 | XP_011521002.1 | |||
AK090624.1 | ||||
AL136921.1 | CAB66855.1 | |||
AY569455.1 | AAS68363.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
esv2422427 | Chr.16:10001 - 2723164 on Build GRCh38 | Duplication | DDX11L10 WASIR2 MIR3677 MIR6768 LOC652276 POLR3K ERVK13-1 CHTF18 NHLRC4 METTL26 MIR3178 LINC00254 NME4 RAB11FIP3 NOXO1 MRPS34 NDUFB10 LOC101929280 RPL3L ATP6V0C CCDC78 CAPN15 LOC105371047 RNPS1 SYNGR3 MIR6767 CACNA1H MIR1225 NARFL TSC2 RPS2 RPL23AP5 MRPL28 PKD1 LOC106660606 LOC105371045 LOC107984876 MIR3177 TBC1D24 JMJD8 TELO2 UBE2I LMF1-AS1 PRSS29P CASKIN1 GNPTG LMF1 MSRB1 LINC00235 IGFALS HAGH SNHG9 TPSB2 MPG EME2 HS3ST6 TRAF7 CLCN7 LOC105371184 SNORA78 E4F1 SSTR5-AS1 HAGHL TMEM204 FAHD1 LOC100134368 MIR940 PDIA2 TMEM8A WFIKKN1 SNORA64 PRSS27 CRAMP1 BRICD5 HBQ1 AXIN1 AMDHD2 RHBDL1 CEMP1 SNORD60 LOC100287175 PTX4 MIR6859-4 MLST8 MSLN MEIOB TPSG1 RHBDF1 MIR3180-5 RAB40C PRR35 IFT140 PDPK1 FLJ42627 SPSB3 NPRL3 ZNF598 SNRNP25 LOC105371046 MIR4516 LOC107987233 HBM HBA1 NME3 NPW HBA2 RPUSD1 RAB26 MIR5587 GNG13 HN1L LOC105371049 MIR4717 TBL3 LOC729652 TSR3 RHOT2 NUBP2 UNKL MIR662 FAM173A TPSAB1 CCNF METRN DNASE1L2 TPSD1 FBXL16 RNF151 PRR25 ECI1 SNORA10 FAM234A PGP HBZ STUB1 NTHL1 ABCA3 C16orf59 MIR6511B1 C1QTNF8 LOC105371038 C16orf91 NTN3 WDR90 ABCA17P KCTD5 SLC9A3R2 BAIAP3 SNHG19 ARHGDIG WDR24 LUC7L MCRIP2 RGS11 SSTR5 DECR2 MAPK8IP3 MIR3176 CCDC154 SOX8 GFER PIGQ |
nsv471072 | Chr.16:1971892 - 2317508 on Build GRCh38 | Loss | MIR4717 CASKIN1 TBL3 MIR3677 MLST8 MIR3180-5 DNASE1L2 TRAF7 NOXO1 ZNF598 ECI1 PGP E4F1 MIR4516 NTHL1 MIR940 ABCA3 RNPS1 SYNGR3 MIR6511B1 MIR1225 NPW BRICD5 TSC2 RAB26 PKD1 LOC106660606 SLC9A3R2 SNHG19 LOC105371049 SNORD60 GFER |
dgv4861n54 | Chr.16:2083900 - 2246850 on Build GRCh38 | Loss | CASKIN1 MLST8 MIR6511B1 MIR1225 BRICD5 TSC2 MIR3180-5 RAB26 PKD1 DNASE1L2 TRAF7 SNHG19 ECI1 PGP E4F1 MIR4516 LOC105371049 SNORD60 |
dgv4863n54 | Chr.16:2141733 - 2274302 on Build GRCh38 | Loss | MIR940 CASKIN1 MIR3677 MLST8 RNPS1 BRICD5 RAB26 DNASE1L2 LOC106660606 TRAF7 SNHG19 ECI1 PGP E4F1 SNORD60 |
nsv457349 | Chr.16:2055054 - 2200730 on Build GRCh38 | Loss | RAB26 PKD1 CASKIN1 TRAF7 SNHG19 MIR6511B1 MIR1225 MIR4516 LOC105371049 SNORD60 TSC2 MIR3180-5 |
nsv457351 | Chr.16:2156590 - 2274302 on Build GRCh38 | Loss | DNASE1L2 MIR940 CASKIN1 MIR3677 LOC106660606 MLST8 TRAF7 RNPS1 ECI1 PGP E4F1 BRICD5 |
nsv1052260 | Chr.16:2074546 - 2629655 on Build GRCh38 | Gain | MIR4717 CASKIN1 LOC729652 MIR3677 MLST8 MIR6768 LOC652276 CCNF MIR3178 MIR3180-5 DNASE1L2 PDPK1 TRAF7 ECI1 PGP E4F1 MIR4516 ATP6V0C MIR940 ABCA3 C16orf59 RNPS1 MIR6511B1 MIR6767 MIR1225 BRICD5 TSC2 RAB26 NTN3 PKD1 ABCA17P LOC106660606 AMDHD2 SNHG19 CEMP1 TBC1D24 LOC105371049 SNORD60 |
nsv952902 | Chr.16:2143400 - 2339999 on Build GRCh38 | Deletion | MIR4717 MIR940 CASKIN1 ABCA3 MIR3677 MLST8 RNPS1 BRICD5 RAB26 DNASE1L2 LOC106660606 TRAF7 SNHG19 ECI1 PGP E4F1 SNORD60 |
More Information
Set Membership: |
Intragenic Non-exonic DGV Variation |