Hs01133343_cn

• Gene Symbol: PCDHGA1
• Assay Reference Genome Location: Chr.5:141360429 on build GRCh38
• Cytoband: 5q31.3

Target Gene Details

• Entrez Gene ID: 56114
• Gene Name: protocadherin gamma subfamily A, 1
• Gene Aliases: PCDH-GAMMA-A1
• Location: Chr.5:141330685-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA1	NM_018912.2			NP_061735.1
	AF152318.1			AAD43712.1

Target Gene Details

• Entrez Gene ID: 56113
• Gene Name: protocadherin gamma subfamily A, 2
• Gene Aliases: PCDH-GAMMA-A2
• Location: Chr.5:141338760-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA2	NM_018915.3			NP_061738.1
	AF152322.1			AAD43716.1

Target Gene Details

• Entrez Gene ID: 56112
• Gene Name: protocadherin gamma subfamily A, 3
• Gene Aliases: PCDH-GAMMA-A3
• Location: Chr.5:141344034-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA3	NM_018916.3			NP_061739.2
	AB208927.1			BAD92164.1
	AF152323.1			AAD43717.1

Target Gene Details

• Entrez Gene ID: 56111
• Gene Name: protocadherin gamma subfamily A, 4
• Gene Aliases: PCDH-GAMMA-A4
• Location: Chr.5:141355025-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA4	NM_018917.3			NP_061740.2
	AF152324.1			AAD43718.1

Target Gene Details

• Entrez Gene ID: 56104
• Gene Name: protocadherin gamma subfamily B, 1
• Gene Aliases: PCDH-GAMMA-B1
• Location: Chr.5:141350261-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGB1	NM_018922.2			NP_061745.1
	AF152330.1			AAD43724.1

Target Gene Details

• Entrez Gene ID: 56103
• Gene Name: protocadherin gamma subfamily B, 2
• Gene Aliases: PCDH-GAMMA-B2
• Location: Chr.5:141360136-141512979 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGB2	NM_018923.2	1	294	NP_061746.1
	NM_032096.1	1	294	NP_115267.1
	AF152331.1	1	294	AAD43725.1
	AF152518.1	1	294	AAD43778.1
	BC101805.1	1	357	AAI01806.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv2759382	Chr.5:140777355 - 141449115 on Build GRCh38	Gain	PCDHB13 PCDHA12 PCDHB18P PCDHB7 PCDHB8 PCDHA1 PCDHB1 PCDHB12 PCDHGA6 PCDHGA8 PCDHB10 PCDHB6 PCDHA11 TAF7 PCDHB16 PCDHA6 PCDHB11 PCDHB17P PCDHGB7 LOC101926905 PCDHGA5 PCDHGB3 PCDHGA10 PCDHB5 PCDHB3 SLC25A2 PCDHB4 PCDHGA7 PCDHB19P PCDHA13 PCDHA4 PCDHA10 PCDHA9 PCDHGB6 PCDHA7 PCDHGA9 PCDHGB8P PCDHGA3 PCDHA3 PCDHB14 PCDHGB1 PCDHGB2 PCDHGA2 PCDHB15 PCDHA2 PCDHAC1 PCDHGA11 PCDHGA1 PCDHB9 PCDHGB4 PCDHGA12 PCDHGB5 PCDHA5 PCDHA8 PCDHAC2 PCDHB2 PCDHGA4
esv3606982	Chr.5:141352280 - 141361411 on Build GRCh38	Loss	PCDHGA1 PCDHGA2 PCDHGA4 PCDHGA3 PCDHGB1 PCDHGB2
nsv599922	Chr.5:141341879 - 141416532 on Build GRCh38	Loss	PCDHGA1 PCDHGB6 PCDHGB4 PCDHGA9 PCDHGB5 PCDHGA5 PCDHGA3 PCDHGB1 PCDHGB2 PCDHGB3 PCDHGA10 PCDHGA2 PCDHGA4 PCDHGA6 PCDHGA8 PCDHGA7

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

homophilic cell adhesion via plasma membrane adhesion molecules
endosome to lysosome transport
lipid tube assembly involved in organelle fusion

Function(s)

calcium ion binding