Hs01090569_cn

• Gene Symbol: SS18
• Assay Reference Genome Location: Chr.18:26038575 on build GRCh38
• Cytoband: 18q11.2

Target Gene Details

• Entrez Gene ID: 6760
• Gene Name: SS18, nBAF chromatin remodeling complex subunit
• Gene Aliases: SSXT, SYT
• Location: Chr.18:26016253-26091217 on Build GRCh38
• Assay Gene Location: Overlaps Intron 13 - Exon 13

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SS18	NM_001007559.2			NP_001007560.1
	NM_001308201.1			NP_001295130.1
	NM_005637.3			NP_005628.2
	XM_006722527.2			XP_006722590.1
	XM_011526145.1			XP_011524447.1
	XM_011526147.2			XP_011524449.1
	XM_011526148.2			XP_011524450.1
	XM_011526149.2			XP_011524451.1
	XM_011526150.2			XP_011524452.1
	XM_011526151.2			XP_011524453.1
	XM_011526152.2			XP_011524454.1
	AF244972.1			AAM00188.1
	AF343880.1			AAK21314.1
	AK289510.1
	AK296949.1
	AK299082.1
	AK301504.1
	AK304305.1
	AK307923.1
	AK316302.1
	AK316338.1
	BC096221.1			AAH96221.1
	BC096222.1			AAH96222.1
	BC096223.1			AAH96223.1
	BC096224.1			AAH96224.1
	CR542088.1			CAG46885.1
	CR542103.1			CAG46900.1
	X79201.1			CAA55792.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv3893078	Chr.18:25391998 - 26039471 on Build GRCh38	Gain	SS18

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

transcription cofactor

Gene Ontology Categories:

Process(es)

microtubule cytoskeleton organization
cell morphogenesis
transcription, DNA-templated
intracellular signal transduction
response to drug
positive regulation of transcription from RNA polymerase II promoter
ephrin receptor signaling pathway
neuronal stem cell population maintenance

Function(s)

protein binding
ligand-dependent nuclear receptor transcription coactivator activity