Hs01003033_cn

• Gene Symbol: TCF25
• Assay Reference Genome Location: Chr.16:89873767 on build GRCh38
• Cytoband: 16q24.3

Target Gene Details

• Entrez Gene ID: 22980
• Gene Name: transcription factor 25
• Gene Aliases: FKSG26, Hulp1, NULP1, PRO2620, hKIAA1049
• Location: Chr.16:89873583-89911384 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TCF25	NM_014972.2	1	182	NP_055787.1
	XM_005256297.2	1	176	XP_005256354.1
	XM_005256298.2	1	176	XP_005256355.1
	XM_005256299.2	1	176	XP_005256356.1
	XM_011522956.2	1	176	XP_011521258.1
	XM_011522957.2	1	176	XP_011521259.1
	XM_011522958.2	1	176	XP_011521260.1
	XM_011522959.2	1	176	XP_011521261.1
	XM_011522960.2	1	176	XP_011521262.1
	XM_011522961.2	1	178	XP_011521263.1
	XM_017023047.1	1	176	XP_016878536.1
	XM_017023048.1	1	176	XP_016878537.1
	XM_017023049.1	1	176	XP_016878538.1
	XM_017023050.1	1	176	XP_016878539.1
	XM_017023051.1	1	176	XP_016878540.1
	XM_017023052.1	1	176	XP_016878541.1
	XM_017023054.1	1	178	XP_016878543.1
	XM_017023055.1	1	178	XP_016878544.1
	XM_017023056.1	1	185	XP_016878545.1
	AF322111.1	1	196	AAG50276.1
	AK024679.1	1	127	BAB14959.1
	AK301053.1	1	176
	BC000959.1	1	105	AAH00959.1
	BC009349.2	1	127	AAH09349.1
	BC011884.2	1	156	AAH11884.1
	BI913551.1	1	182
	DQ321703.1	1	196	ABC55265.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv573744	Chr.16:89738447 - 89915950 on Build GRCh38	Loss	TCF25 LOC105371419 SPIRE2 LOC107984817 ZNF276 FANCA
esv2758671	Chr.16:89804324 - 89901541 on Build GRCh38	Loss	TCF25 LOC105371419 SPIRE2 LOC107984817 FANCA
esv2762221	Chr.16:89610380 - 90039318 on Build GRCh38	Gain+Loss	TCF25 SPATA2L LOC105371419 SPATA33 TUBB3 GAS8 FANCA VPS9D1-AS1 DEF8 AFG3L1P DBNDD1 CHMP1A CDK10 MC1R VPS9D1 DPEP1 SPIRE2 CENPBD1 LOC107984817 ZNF276 GAS8-AS1
nsv573810	Chr.16:89857498 - 90037251 on Build GRCh38	Loss	DBNDD1 TCF25 MC1R TUBB3 SPIRE2 CENPBD1 GAS8-AS1 GAS8 DEF8 AFG3L1P
nsv428331	Chr.16:89216635 - 90185980 on Build GRCh38	Gain+Loss	SPG7 SPATA2L ANKRD11 TUBB3 LOC100287036 GAS8 DBNDD1 CHMP1A CDK10 TUBB8P7 MC1R PRDM7 VPS9D1 LOC101927817 SPIRE2 ZNF276 GAS8-AS1 LOC105371414 TCF25 RPL13 ZNF778 LOC105371419 SPATA33 URAHP FANCA VPS9D1-AS1 DEF8 AFG3L1P FAM157C CPNE7 DPEP1 SNORD68 CENPBD1 LOC107984817
nsv573799	Chr.16:89852186 - 90022379 on Build GRCh38	Gain	DBNDD1 TCF25 MC1R LOC105371419 TUBB3 SPIRE2 CENPBD1 GAS8 DEF8 AFG3L1P
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	CBFA2T3 RNF166 TRAPPC2L LOC100287036 GAS8 DBNDD1 LOC101927817 PIEZO1 ACSF3 SPIRE2 LOC100289580 SNAI3-AS1 LOC105371414 LOC105371409 RPL13 ZNF778 LOC105371419 LOC101927793 SPATA33 URAHP CTU2 LINC00304 AFG3L1P SLC22A31 LOC339059 CPNE7 CENPBD1 CYBA SPG7 SPATA2L GALNS PABPN1L SNAI3 ANKRD11 TUBB3 LOC100129697 IL17C CHMP1A CDK10 TUBB8P7 MC1R PRDM7 VPS9D1 MVD LOC400558 ZNF276 GAS8-AS1 MIR4722 TCF25 APRT FANCA VPS9D1-AS1 DEF8 CDT1 LOC107987238 CDH15 FAM157C DPEP1 SNORD68 LOC107984817

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
transcription, DNA-templated
heart development

Function(s)

DNA binding
transcription factor activity, sequence-specific DNA binding
protein binding