Hs00901936_cn

• Gene Symbol: PCDHGA1
• Assay Reference Genome Location: Chr.5:141370792 on build GRCh38
• Cytoband: 5q31.3

Target Gene Details

• Entrez Gene ID: 56114
• Gene Name: protocadherin gamma subfamily A, 1
• Gene Aliases: PCDH-GAMMA-A1
• Location: Chr.5:141330685-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA1	NM_018912.2			NP_061735.1
	AF152318.1			AAD43712.1

Target Gene Details

• Entrez Gene ID: 56113
• Gene Name: protocadherin gamma subfamily A, 2
• Gene Aliases: PCDH-GAMMA-A2
• Location: Chr.5:141338760-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA2	NM_018915.3			NP_061738.1
	AF152322.1			AAD43716.1

Target Gene Details

• Entrez Gene ID: 56112
• Gene Name: protocadherin gamma subfamily A, 3
• Gene Aliases: PCDH-GAMMA-A3
• Location: Chr.5:141344034-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA3	NM_018916.3			NP_061739.2
	AB208927.1			BAD92164.1
	AF152323.1			AAD43717.1

Target Gene Details

• Entrez Gene ID: 56111
• Gene Name: protocadherin gamma subfamily A, 4
• Gene Aliases: PCDH-GAMMA-A4
• Location: Chr.5:141355025-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA4	NM_018917.3			NP_061740.2
	AF152324.1			AAD43718.1

Target Gene Details

• Entrez Gene ID: 56110
• Gene Name: protocadherin gamma subfamily A, 5
• Gene Aliases: CDH-GAMMA-A5, ME3, PCDH-GAMMA-A5
• Location: Chr.5:141364331-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA5	NM_018918.2			NP_061741.1
	AF152325.1			AAD43719.1

Target Gene Details

• Entrez Gene ID: 56104
• Gene Name: protocadherin gamma subfamily B, 1
• Gene Aliases: PCDH-GAMMA-B1
• Location: Chr.5:141350261-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGB1	NM_018922.2			NP_061745.1
	AF152330.1			AAD43724.1

Target Gene Details

• Entrez Gene ID: 56103
• Gene Name: protocadherin gamma subfamily B, 2
• Gene Aliases: PCDH-GAMMA-B2
• Location: Chr.5:141360136-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGB2	NM_018923.2			NP_061746.1
	AF152331.1			AAD43725.1

Target Gene Details

• Entrez Gene ID: 56102
• Gene Name: protocadherin gamma subfamily B, 3
• Gene Aliases: PCDH-GAMMA-B3
• Location: Chr.5:141370264-141512979 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGB3	NM_018924.4	1	529	NP_061747.2
	NM_032097.2	1	529	NP_115268.2
	AF152332.1	1	398	AAD43726.1
	AF152519.1	1	398	AAD43779.1
	BC150172.1	1	529

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv2759382	Chr.5:140777355 - 141449115 on Build GRCh38	Gain	PCDHGA11 PCDHGB4 PCDHA1 PCDHGB8P SLC25A2 PCDHAC1 PCDHA4 PCDHB5 PCDHGA12 PCDHA10 PCDHB12 PCDHAC2 TAF7 PCDHB19P PCDHB9 PCDHB2 LOC101926905 PCDHB17P PCDHB4 PCDHGB6 PCDHB1 PCDHB10 PCDHA6 PCDHA9 PCDHB3 PCDHGA2 PCDHB16 PCDHGA1 PCDHB6 PCDHB14 PCDHA12 PCDHA2 PCDHB13 PCDHGA5 PCDHA13 PCDHGA7 PCDHGA10 PCDHB11 PCDHA8 PCDHGA9 PCDHB18P PCDHGA8 PCDHA3 PCDHB7 PCDHA7 PCDHA5 PCDHB15 PCDHGB1 PCDHGB7 PCDHA11 PCDHGB5 PCDHGA4 PCDHGB2 PCDHB8 PCDHGB3 PCDHGA3 PCDHGA6
nsv599922	Chr.5:141341879 - 141416532 on Build GRCh38	Loss	PCDHGA5 PCDHGB6 PCDHGB4 PCDHGA7 PCDHGB1 PCDHGB5 PCDHGA4 PCDHGA10 PCDHGA2 PCDHGB2 PCDHGA9 PCDHGB3 PCDHGA1 PCDHGA8 PCDHGA3 PCDHGA6

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

homophilic cell adhesion via plasma membrane adhesion molecules
endosome to lysosome transport
lipid tube assembly involved in organelle fusion

Function(s)

calcium ion binding