Assay Details
Target Gene Details
Entrez Gene ID: | 26168 |
Gene Name: | SUMO1/sentrin/SMT3 specific peptidase 3 |
Gene Aliases: |
SMT3IP1, SSP3, Ulp1 |
Location: |
Chr.17:7561992-7571969 on Build GRCh38 |
Assay Gene Location: | Within Exon 8 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SENP3 | NM_015670.5 | 8 | 1707 | NP_056485.2 |
AF199459.1 | 8 | 1494 | AAL25652.1 | |
AL050283.1 | 7 | 1018 | CAB43384.2 | |
AL834294.1 | 8 | 1501 | CAD38967.1 | |
AY008763.1 | 8 | 1475 | AAG33252.1 | |
BC048306.1 | 7 | 945 | AAH48306.1 | |
BC080658.1 | 8 | 1689 | AAH80658.1 |
Target Gene Details
Entrez Gene ID: | 100533955 |
Gene Name: | SENP3-EIF4A1 readthrough (NMD candidate) |
Gene Aliases: |
- |
Location: |
Chr.17:7561992-7579006 on Build GRCh38 |
Assay Gene Location: | Within Exon 8 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SENP3-EIF4A1 | NR_037926.1 | 8 | 1707 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
esv2422288 | Chr.17:6789933 - 7646709 on Build GRCh38 | Deletion | RNASEK ALOX12-AS1 SHBG ZBTB4 EIF4A1 C17orf49 ATP1B2 ACADVL SAT2 TNK1 KCTD11 ASGR2 DVL2 SLC35G6 ALOX12P2 ACAP1 LOC100996842 FXR2 SENP3-EIF4A1 EIF5A CTDNEP1 SNORD10 SPEM1 RNASEK-C17orf49 PLSCR3 TNFSF12-TNFSF13 GABARAP MIR195 GPS2 TNFSF12 CD68 SLC16A13 SNORA48 SLC2A4 SLC16A11 MIR497HG SNORA67 FGF11 ASGR1 BCL6B CHRNB1 MIR497 PHF23 POLR2A C17orf74 CLDN7 TMEM102 NLGN2 SENP3 CLEC10A ELP5 SOX15 MIR324 LOC107983988 TMEM256 FBXO39 ALOX12 YBX2 TMEM256-PLSCR3 TMEM95 NEURL4 DLG4 TNFSF13 MPDU1 TEKT1 |
nsv574322 | Chr.17:7010333 - 7689462 on Build GRCh38 | Loss | RNASEK ALOX12-AS1 SHBG ZBTB4 EIF4A1 C17orf49 ATP1B2 ACADVL SAT2 TNK1 KCTD11 ASGR2 DVL2 SLC35G6 WRAP53 TP53 ACAP1 LOC100996842 FXR2 SENP3-EIF4A1 EIF5A CTDNEP1 SNORD10 SPEM1 RNASEK-C17orf49 PLSCR3 TNFSF12-TNFSF13 GABARAP MIR195 GPS2 TNFSF12 CD68 SLC16A13 SNORA48 SLC2A4 SLC16A11 MIR497HG SNORA67 FGF11 ASGR1 BCL6B CHRNB1 MIR497 PHF23 POLR2A C17orf74 CLDN7 TMEM102 NLGN2 SENP3 CLEC10A ELP5 SOX15 MIR324 LOC107983988 TMEM256 ALOX12 YBX2 TMEM256-PLSCR3 TMEM95 NEURL4 DLG4 TNFSF13 MPDU1 |
More Information
Set Membership: |
Intragenic Exonic DGV Variation |