Assay Details
Target Gene Details
Entrez Gene ID: | 2972 |
Gene Name: | BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit |
Gene Aliases: |
BRF, BRF-1, CFDS, GTF3B, HEL-S-76p, TAF3B2, TAF3C, TAFIII90, TF3B90, TFIIIB90, hBRF |
Location: |
Chr.14:105209286-105315577 on Build GRCh38 |
Assay Gene Location: | Within Exon 22 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
BRF1 | NM_001242786.1 | 18 | 3028 | NP_001229715.1 |
NM_001242787.1 | 18 | 2962 | NP_001229716.1 | |
NM_001242788.1 | 17 | 3172 | NP_001229717.1 | |
NM_001242789.1 | 13 | 2452 | NP_001229718.1 | |
NM_001519.3 | 18 | 3253 | NP_001510.2 | |
NM_145685.2 | 14 | 3161 | NP_663718.1 | |
XM_005267561.3 | 18 | 3272 | XP_005267618.1 | |
XM_005267563.3 | 14 | 3965 | XP_005267620.1 | |
XM_006720123.2 | 13 | 3393 | XP_006720186.1 | |
XM_011536673.1 | 17 | 3125 | XP_011534975.1 | |
XM_011536674.1 | 14 | 3543 | XP_011534976.1 | |
AJ297406.1 | CAC04512.1 | |||
AJ297407.1 | 14 | 3169 | CAC04513.1 | |
AK096471.1 | 13 | 2452 | ||
AK124665.1 | 8 | 2317 | ||
AK125024.1 | 5 | 2767 | BAC86024.1 | |
AK126499.1 | 1 | 3262 | ||
BC071637.1 | 13 | 2317 | AAH71637.1 | |
BC086856.1 | 17 | 2905 | AAH86856.1 | |
BC103859.1 | AAI03860.1 | |||
BC103860.2 | AAI03861.1 | |||
BC103861.2 | AAI03862.1 | |||
BC133655.1 | ||||
U28838.1 | 18 | 3250 | AAC50170.1 | |
U75276.1 | 18 | 2957 | AAB38876.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv566186 | Chr.14:105209364 - 105312968 on Build GRCh38 | Loss |
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esv2760014 | Chr.14:105047009 - 105483089 on Build GRCh38 | Loss |
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nsv510651 | Chr.14:105190545 - 105258818 on Build GRCh38 | Deletion |
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nsv470679 | Chr.14:105124547 - 105605978 on Build GRCh38 | Loss |
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nsv9175 | Chr.14:105030172 - 105222604 on Build GRCh38 | Gain |
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nsv952279 | Chr.14:105136864 - 105237863 on Build GRCh38 | Deletion |
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nsv566185 | Chr.14:105194429 - 105219528 on Build GRCh38 | Loss |
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dgv3977n54 | Chr.14:105149311 - 105219528 on Build GRCh38 | Loss |
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nsv1054574 | Chr.14:103210111 - 105365114 on Build GRCh38 | Loss |
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
nsv1052190 | Chr.14:104957424 - 105256316 on Build GRCh38 | Gain |
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nsv517055 | Chr.14:105136282 - 106779068 on Build GRCh38 | Gain+Loss |
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
nsv566150 | Chr.14:104969312 - 105223755 on Build GRCh38 | Loss |
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![](/order/genome-database/details/genotyping/assets/img/arrow_icon_up_black.png)
More Information
Additional Information:
For this assay, SNP(s) [rs193081985] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
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Panther Classification:
Gene Ontology Categories:
![](/order/genome-database/details/genotyping/assets/img/arrow_icon_up_black.png)