Assay Details
Target Gene Details
Entrez Gene ID: | 10522 |
Gene Name: | DEAF1, transcription factor |
Gene Aliases: |
MRD24, NUDR, SPN, ZMYND5 |
Location: |
Chr.11:644220-695754 on Build GRCh38 |
Assay Gene Location: | Within Exon 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
DEAF1 | NM_001293634.1 | 1 | 86 | NP_001280563.1 |
NM_021008.3 | 1 | 86 | NP_066288.2 | |
BM696110.1 | 1 | 72 | ||
HY094363.1 | 1 | 86 |
Target Gene Details
Entrez Gene ID: | 283232 |
Gene Name: | transmembrane protein 80 |
Gene Aliases: |
- |
Location: |
Chr.11:695386-705028 on Build GRCh38 |
Assay Gene Location: | Within Exon 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
TMEM80 | NM_001042463.2 | 1 | 79 | NP_001035928.2 |
NM_001276253.1 | 1 | 79 | NP_001263182.1 | |
NM_001276274.1 | 1 | 79 | NP_001263203.1 | |
NM_174940.3 | 1 | 79 | NP_777600.3 | |
XM_006718206.3 | 1 | 85 | XP_006718269.3 | |
XM_017017600.1 | 1 | 284 | XP_016873089.1 | |
BC008671.1 | ||||
BI916171.1 | 1 | 54 | ||
DR006597.1 | ||||
HY080028.1 | 1 | 80 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
esv3625074 | Chr.11:669311 - 702135 on Build GRCh38 | Loss | TMEM80 DEAF1 |
nsv469923 | Chr.11:378188 - 1302334 on Build GRCh38 | Loss | MUC5B LOC143666 ANO9 TMEM80 PTDSS2 POLR2L PKP3 CDHR5 HRAS DRD4 TOLLIP AP2A2 B4GALNT4 PANO1 MUC2 MIR6744 CD151 LOC101059906 SCT RPLP2 TALDO1 MUC6 SLC25A22 RASSF7 MUC5AC PHRF1 LOC171391 IRF7 LOC101927503 LRRC56 PNPLA2 PIDD1 PDDC1 MIR210HG DEAF1 SNORA52 SIGIRR MIR210 TSPAN4 EPS8L2 CHID1 CRACR2B RNH1 LMNTD2 CEND1 |
nsv832043 | Chr.11:631027 - 758602 on Build GRCh38 | Loss | EPS8L2 TMEM80 TALDO1 DEAF1 DRD4 |
esv2759794 | Chr.11:409846 - 1336162 on Build GRCh38 | Loss | MUC5B LOC143666 ANO9 TMEM80 PTDSS2 POLR2L CDHR5 HRAS DRD4 TOLLIP AP2A2 PANO1 MUC2 MIR6744 CD151 LOC101059906 SCT RPLP2 TALDO1 MUC6 SLC25A22 RASSF7 MUC5AC PHRF1 LOC171391 IRF7 LOC101927503 LRRC56 PNPLA2 PIDD1 PDDC1 MIR210HG DEAF1 SNORA52 SIGIRR MIR210 TOLLIP-AS1 TSPAN4 EPS8L2 CHID1 CRACR2B RNH1 LMNTD2 CEND1 |
dgv182e199 | Chr.11:349830 - 943372 on Build GRCh38 | Deletion | LOC143666 ANO9 TMEM80 PTDSS2 POLR2L PKP3 CDHR5 HRAS DRD4 AP2A2 B4GALNT4 PANO1 CD151 LOC101059906 SCT RPLP2 TALDO1 SLC25A22 RASSF7 PHRF1 LOC171391 IRF7 LRRC56 PNPLA2 PIDD1 PDDC1 MIR210HG DEAF1 SNORA52 SIGIRR MIR210 TSPAN4 EPS8L2 CHID1 CRACR2B RNH1 LMNTD2 CEND1 |
nsv1159791 | Chr.11:461793 - 909492 on Build GRCh38 | Deletion | LOC143666 TMEM80 PTDSS2 POLR2L CDHR5 HRAS DRD4 PANO1 CD151 LOC101059906 SCT RPLP2 TALDO1 SLC25A22 RASSF7 PHRF1 LOC171391 IRF7 LRRC56 PNPLA2 PIDD1 PDDC1 MIR210HG DEAF1 SNORA52 MIR210 TSPAN4 EPS8L2 CHID1 CRACR2B RNH1 LMNTD2 CEND1 |
More Information
Set Membership: |
Intragenic Exonic DGV Variation |