Assay Details
Target Gene Details
Entrez Gene ID: | 5252 |
Gene Name: | PHD finger protein 1 |
Gene Aliases: |
MTF2L2, PCL1, PHF2, TDRD19C, hPHF1 |
Location: |
Chr.6:33410751-33416453 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 9 - Exon 10 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
PHF1 | NM_002636.4 | NP_002627.1 | ||
NM_024165.2 | NP_077084.1 | |||
NR_027692.1 | ||||
XM_011514662.1 | XP_011512964.1 | |||
XM_011514663.1 | XP_011512965.1 | |||
XM_011514664.1 | XP_011512966.1 | |||
XM_011514665.1 | XP_011512967.1 | |||
XM_011514666.1 | XP_011512968.1 | |||
XM_011514669.1 | XP_011512971.1 | |||
XM_011514670.2 | XP_011512972.1 | |||
XM_017010939.1 | XP_016866428.1 | |||
AF029678.1 | AAC52062.1 | |||
AF052205.1 | AAC13273.1 | |||
AK225913.1 | ||||
AK295412.1 | ||||
AK299162.1 | ||||
AK316499.1 | ||||
BC008834.2 | AAH08834.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv830637 | Chr.6:33361588 - 33542927 on Build GRCh38 | Loss | CUTA SYNGAP1 PHF1 MIR5004 ZBTB9 KIFC1 |
nsv830635 | Chr.6:33270228 - 33446010 on Build GRCh38 | Loss | PFDN6 RGL2 MIR6873 WDR46 TAPBP ZBTB22 SYNGAP1 B3GALT4 DAXX MIR5004 MIR6834 CUTA PHF1 RPS18 VPS52 KIFC1 |
nsv1073969 | Chr.6:31456422 - 33480523 on Build GRCh38 | Deletion | SLC44A4 RGL2 GPSM3 RING1 HSD17B8 BAG6 MIR1236 SNORD48 DXO MIR219A1 C6orf10 HLA-DMB MIR4646 PSMB9 PRRC2A CUTA BRD2 FKBPL HLA-DPB1 TAP2 HSPA1B PPT2 PPP1R2P1 SNORD52 VPS52 PFDN6 PSMB8-AS1 C6orf25 DAXX HLA-DOA HSPA1L LOC100507547 HLA-DRB1 EGFL8 ZBTB12 DDX39B HSPA1A MSH5 TNF LTB COL11A2 SNORD84 C4A AIF1 MIR6721 LY6G5C ATF6B PPT2-EGFL8 BTNL2 ATP6V1G2 LOC102725068 LY6G6C NFKBIL1 WDR46 ZBTB22 LSM2 LY6G6F LOC100287329 MIR6834 APOM SAPCD1 VWA7 HLA-DRB6 MICB NOTCH4 SAPCD1-AS1 HLA-DOB SYNGAP1 LST1 PSMB8 LY6G6E AGPAT1 STK19 HLA-DQB1-AS1 MIR6832 PHF1 HLA-DQA2 HLA-DPA1 CSNK2B SLC39A7 GPANK1 HLA-DQA1 HLA-DQB1 LY6G5B VARS TNXA SNORD117 HCP5 TNXB TAPBP LOC101929163 AGER HLA-DQB2 HLA-DMA LY6G6D PBX2 NELFE HCG26 C6orf48 RPS18 CYP21A2 CFB HLA-DRA DDX39B-AS1 LTA HCG23 HCG24 ABHD16A HCG25 MCCD1 HLA-DPB2 EHMT2 ATP6V1G2-DDX39B MSH5-SAPCD1 SNORA38 ZBTB9 MIR6833 TAP1 C2-AS1 MIR3135B NEU1 C4B PRRT1 C2 MIR6873 CYP21A1P B3GALT4 MIR5004 HLA-DRB5 C6orf47 RXRB CLIC1 DDAH2 LOC100294145 NCR3 SKIV2L KIFC1 RNF5 |
nsv1112900 | Chr.6:31455323 - 33480423 on Build GRCh38 | Deletion | SLC44A4 RGL2 GPSM3 RING1 HSD17B8 BAG6 MIR1236 SNORD48 DXO MIR219A1 C6orf10 HLA-DMB MIR4646 PSMB9 PRRC2A CUTA BRD2 FKBPL HLA-DPB1 TAP2 HSPA1B PPT2 PPP1R2P1 SNORD52 VPS52 PFDN6 PSMB8-AS1 C6orf25 DAXX HLA-DOA HSPA1L LOC100507547 HLA-DRB1 EGFL8 ZBTB12 DDX39B HSPA1A MSH5 TNF LTB COL11A2 SNORD84 C4A AIF1 MIR6721 LY6G5C ATF6B PPT2-EGFL8 BTNL2 ATP6V1G2 LOC102725068 LY6G6C NFKBIL1 WDR46 ZBTB22 LSM2 LY6G6F LOC100287329 MIR6834 APOM SAPCD1 VWA7 HLA-DRB6 MICB NOTCH4 SAPCD1-AS1 HLA-DOB SYNGAP1 LST1 PSMB8 LY6G6E AGPAT1 STK19 HLA-DQB1-AS1 MIR6832 PHF1 HLA-DQA2 HLA-DPA1 CSNK2B SLC39A7 GPANK1 HLA-DQA1 HLA-DQB1 LY6G5B VARS TNXA SNORD117 HCP5 TNXB TAPBP LOC101929163 AGER HLA-DQB2 HLA-DMA LY6G6D PBX2 NELFE HCG26 C6orf48 RPS18 CYP21A2 CFB HLA-DRA DDX39B-AS1 LTA HCG23 HCG24 ABHD16A HCG25 MCCD1 HLA-DPB2 EHMT2 ATP6V1G2-DDX39B MSH5-SAPCD1 SNORA38 ZBTB9 MIR6833 TAP1 C2-AS1 MIR3135B NEU1 C4B PRRT1 C2 MIR6873 CYP21A1P B3GALT4 MIR5004 HLA-DRB5 C6orf47 RXRB CLIC1 DDAH2 LOC100294145 NCR3 SKIV2L KIFC1 RNF5 |
nsv1119076 | Chr.6:32595823 - 33480623 on Build GRCh38 | Deletion | RGL2 HCG24 RING1 HSD17B8 HLA-DOB SYNGAP1 PSMB8 COL11A2 HCG25 MIR219A1 HLA-DPB2 HLA-DMB PSMB9 HLA-DQB1-AS1 CUTA BRD2 HLA-DPB1 TAP2 PHF1 HLA-DQA2 HLA-DPA1 ZBTB9 PPP1R2P1 TAP1 SLC39A7 HLA-DQA1 MIR3135B VPS52 PFDN6 HLA-DQB1 PSMB8-AS1 MIR6873 WDR46 TAPBP ZBTB22 B3GALT4 DAXX MIR5004 MIR6834 HLA-DOA HLA-DQB2 RXRB HLA-DMA LOC100294145 RPS18 KIFC1 |
More Information
Set Membership: |
Intragenic Non-exonic DGV Variation |